Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is fiu [H]
Identifier: 116689677
GI number: 116689677
Start: 1837157
End: 1839127
Strand: Reverse
Name: fiu [H]
Synonym: Bcen2424_1655
Alternate gene names: 116689677
Gene position: 1839127-1837157 (Counterclockwise)
Preceding gene: 116689686
Following gene: 116689676
Centisome position: 52.79
GC content: 67.99
Gene sequence:
>1971_bases GTGAGTACGGCGACGCGCACCGCGAGCGATCCGCGCGACGTACCGCAAACCATCGACAGCGTCCCGGTAGAGGAAACGCT GTCCTATGGCGGTCGCACGCTGGCCGACGCGCTGGCCGGCGTGCCCGGTGTGTCCAATACGTCGGACACGCGCTTCGATT CGTTCCGCATTCGCGGCTTTTCCGCCGCGGGCGACCTGCTGCTCGACGGCATGCGCGACGATGCGCAATACGTGCGCAGT CTCAGCAACATCGAACGCGTCGAAGTGCTGAAGGGGCCGGCAGCGGCGCTGTACGGGCGCGGCAGCGGCGGCGGCGTCAT CAACCGGATCACCAAGCAGCCGTTGCCGGAAAACTTCGGGCATCTGTCGGCGGCGACCGGCAGCTATGGACGGCTCGGCG CGTCGGTCGATCTCAACCGGATGCTGTCGAGCGCATGGAGCGTGCGGCTCAATGCCGGACGCGAACACGCAGGCAGCTTC CGCGACCACGTCGACAGCACGCGTCAGTACGTCGCACCGTCGATCAAATGGCACGACGCGCGGCGCAGCTGGCTGCTGCA GTTCGAATACGACGCGTACCGGCGCGTGCCCGATCGCGGCATGCCGGCGCCGGTCGCCGCGCTCGACGCGGCCGGCAAGC CGTTCGCGTTCTCGCTGCCGTCCGCGCCACGCGCAACCTTCTTCGGCGCGGCGGGCCGCGACACGATTCGCGACGAGAAC ATGAACTGGCGCTCGGTCTTCACGCACGCGCTCGACGGCGACTGGGAATTGCGCCATACGCTCGGCGTGCTGAATTTGCG CAGCACCTTCGACAATACCTACGTCACGCAAAGCTACGTCGCGAAGCCGCGCGACTACCGGCATGTGCAACGCGCACGCT ATCTGCAGGACATGACGCATCTCAACGTCCAGACCGGCGTCGAACTGGGCGGCAAGGTCGCAACCGGTCCGGCGCTGCAT CACCTGCTGTTCGGTATCGAATACGGCTGGCAGAAACGCGCGCCGACGCTCTGGCAGGCCGACGCGGCGCCGATTCCGGT GACCGGGCCGGATCGTTTCGCCCTGGTCGGCTCGACGCCGCGCCCGTATGCGATGAACCGCCACCGCGTCAGCGACTACG CGATCTTCGCGCAGGATCGCGTCGACCTCGGGCGAGCGTGGAAGCTCCTCGGCGGCCTGCGCGGGGAACGTTTCGACGTC GATTCGACCAACGCGCTGAACGGCCTGCATGCACGGCGCACGACGGCGGCATGGAGCCCGCGGCTCGGCGTCGTGTGGTC GCCGGTCGGCACGCACAGCCTGTATGCGTCGTACAGCAAGAACTTCGCGCCGGTCGGTGGCGACCTGATCGGCATCACGC CCGACGCGCGCGGCAACGCCAACGACCTCGGCCCGCAATACACGCGCCAATACGAGATCGGCGTGAAAAGCGACTGGCGC GACGGCGCGCTGAGCACGACGCTCGCGCTGTTTCAGCTCGACCTGTACAACCGCCGCATCGCCGATCCGGTTCGGCCGGG CTTTTTCGACCTCACCGGCCTCGAGCGCAATCGCGGCCTGGAACTGGGCGTCGCCGGCCGGCTCGCGGGCGACTGGTTCG TCCGCGGCGGCATCGGCTGGCAACACGCGCGGGTGGTCGACGCCGAGCCGAAGTACGCGGGCAAGCGCTCGGCGGGCGTG TCGGCGTCGAACGGCAGCCTGTTCGTCGGCCATGCGCCGCTACGCGGTTTTTTCGCGGAACTCGGGCTGGTGTACGAAGG CGCGCGTTACGCCGATCGCGACAACCTGCTCGAATTGCCCGCGTACGTTCGCTGGGACGGCAAGGCCGGCTATCGCACGC GCGACTTCGAGGTGACGCTGGCGGCCGTCAACCTGACCGATCGCGATTACTACGCGAATGCGACGGGCCTCGCGCAGATC ATGCCCGGTACGCCACGCACGTTCACGCTGACGGCGGCATACAAGTTCTGA
Upstream 100 bases:
>100_bases CGTTGCTTCCTCCCCTGCTCCAGCAGCCGAGTTCGACGACGAACTGCCTGCGGTCGAAGTACGCAGCCGTCGTCATCCAA ACGATCCGCGCGCCGAAAGC
Downstream 100 bases:
>100_bases CCTCGCGGGTAGCGCCGACACCCGCGCAGCCGGCCCGCCGGGCGGCTTGCGGGTTGCACGCCTGTGCTATCGTATGCGCC GCGTTCGGTGCTCGCATGCG
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: Ferric iron uptake protein; TonB-dependent receptor fiu [H]
Number of amino acids: Translated: 656; Mature: 655
Protein sequence:
>656_residues MSTATRTASDPRDVPQTIDSVPVEETLSYGGRTLADALAGVPGVSNTSDTRFDSFRIRGFSAAGDLLLDGMRDDAQYVRS LSNIERVEVLKGPAAALYGRGSGGGVINRITKQPLPENFGHLSAATGSYGRLGASVDLNRMLSSAWSVRLNAGREHAGSF RDHVDSTRQYVAPSIKWHDARRSWLLQFEYDAYRRVPDRGMPAPVAALDAAGKPFAFSLPSAPRATFFGAAGRDTIRDEN MNWRSVFTHALDGDWELRHTLGVLNLRSTFDNTYVTQSYVAKPRDYRHVQRARYLQDMTHLNVQTGVELGGKVATGPALH HLLFGIEYGWQKRAPTLWQADAAPIPVTGPDRFALVGSTPRPYAMNRHRVSDYAIFAQDRVDLGRAWKLLGGLRGERFDV DSTNALNGLHARRTTAAWSPRLGVVWSPVGTHSLYASYSKNFAPVGGDLIGITPDARGNANDLGPQYTRQYEIGVKSDWR DGALSTTLALFQLDLYNRRIADPVRPGFFDLTGLERNRGLELGVAGRLAGDWFVRGGIGWQHARVVDAEPKYAGKRSAGV SASNGSLFVGHAPLRGFFAELGLVYEGARYADRDNLLELPAYVRWDGKAGYRTRDFEVTLAAVNLTDRDYYANATGLAQI MPGTPRTFTLTAAYKF
Sequences:
>Translated_656_residues MSTATRTASDPRDVPQTIDSVPVEETLSYGGRTLADALAGVPGVSNTSDTRFDSFRIRGFSAAGDLLLDGMRDDAQYVRS LSNIERVEVLKGPAAALYGRGSGGGVINRITKQPLPENFGHLSAATGSYGRLGASVDLNRMLSSAWSVRLNAGREHAGSF RDHVDSTRQYVAPSIKWHDARRSWLLQFEYDAYRRVPDRGMPAPVAALDAAGKPFAFSLPSAPRATFFGAAGRDTIRDEN MNWRSVFTHALDGDWELRHTLGVLNLRSTFDNTYVTQSYVAKPRDYRHVQRARYLQDMTHLNVQTGVELGGKVATGPALH HLLFGIEYGWQKRAPTLWQADAAPIPVTGPDRFALVGSTPRPYAMNRHRVSDYAIFAQDRVDLGRAWKLLGGLRGERFDV DSTNALNGLHARRTTAAWSPRLGVVWSPVGTHSLYASYSKNFAPVGGDLIGITPDARGNANDLGPQYTRQYEIGVKSDWR DGALSTTLALFQLDLYNRRIADPVRPGFFDLTGLERNRGLELGVAGRLAGDWFVRGGIGWQHARVVDAEPKYAGKRSAGV SASNGSLFVGHAPLRGFFAELGLVYEGARYADRDNLLELPAYVRWDGKAGYRTRDFEVTLAAVNLTDRDYYANATGLAQI MPGTPRTFTLTAAYKF >Mature_655_residues STATRTASDPRDVPQTIDSVPVEETLSYGGRTLADALAGVPGVSNTSDTRFDSFRIRGFSAAGDLLLDGMRDDAQYVRSL SNIERVEVLKGPAAALYGRGSGGGVINRITKQPLPENFGHLSAATGSYGRLGASVDLNRMLSSAWSVRLNAGREHAGSFR DHVDSTRQYVAPSIKWHDARRSWLLQFEYDAYRRVPDRGMPAPVAALDAAGKPFAFSLPSAPRATFFGAAGRDTIRDENM NWRSVFTHALDGDWELRHTLGVLNLRSTFDNTYVTQSYVAKPRDYRHVQRARYLQDMTHLNVQTGVELGGKVATGPALHH LLFGIEYGWQKRAPTLWQADAAPIPVTGPDRFALVGSTPRPYAMNRHRVSDYAIFAQDRVDLGRAWKLLGGLRGERFDVD STNALNGLHARRTTAAWSPRLGVVWSPVGTHSLYASYSKNFAPVGGDLIGITPDARGNANDLGPQYTRQYEIGVKSDWRD GALSTTLALFQLDLYNRRIADPVRPGFFDLTGLERNRGLELGVAGRLAGDWFVRGGIGWQHARVVDAEPKYAGKRSAGVS ASNGSLFVGHAPLRGFFAELGLVYEGARYADRDNLLELPAYVRWDGKAGYRTRDFEVTLAAVNLTDRDYYANATGLAQIM PGTPRTFTLTAAYKF
Specific function: Involved in the active transport across the outer membrane of iron complexed with catecholate siderophores such as dihydroxybenzoylserine and dihydroxybenzoate. It derives its energy for transport by interacting with the trans-periplasmic membrane protein
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1787024, Length=730, Percent_Identity=25.6164383561644, Blast_Score=164, Evalue=1e-41, Organism=Escherichia coli, GI1786344, Length=714, Percent_Identity=26.3305322128852, Blast_Score=155, Evalue=7e-39, Organism=Escherichia coli, GI1790743, Length=304, Percent_Identity=24.0131578947368, Blast_Score=72, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 72082; Mature: 71950
Theoretical pI: Translated: 9.78; Mature: 9.78
Prosite motif: PS01156 TONB_DEPENDENT_REC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTATRTASDPRDVPQTIDSVPVEETLSYGGRTLADALAGVPGVSNTSDTRFDSFRIRGF CCCCCCCCCCCHHHHHHHHCCCHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEE SAAGDLLLDGMRDDAQYVRSLSNIERVEVLKGPAAALYGRGSGGGVINRITKQPLPENFG CCCCHHHHCCCCHHHHHHHHHHCCHHHHHHCCCCCEEEECCCCCCHHHHHHCCCCCCCCC HLSAATGSYGRLGASVDLNRMLSSAWSVRLNAGREHAGSFRDHVDSTRQYVAPSIKWHDA CEEECCCCCCCCCCCCCHHHHHHHHHEEEEECCCHHCCHHHHHHHHHHHHHCCCCEEECC RRSWLLQFEYDAYRRVPDRGMPAPVAALDAAGKPFAFSLPSAPRATFFGAAGRDTIRDEN CCEEEEEEECHHHHCCCCCCCCCCHHHHHCCCCCEEEECCCCCCCEEECCCCCCCCCCCC MNWRSVFTHALDGDWELRHTLGVLNLRSTFDNTYVTQSYVAKPRDYRHVQRARYLQDMTH CCHHHHHHHHCCCCEEEHHHHHHEEHHHHCCCCCEEHHHHCCCHHHHHHHHHHHHHHHHH LNVQTGVELGGKVATGPALHHLLFGIEYGWQKRAPTLWQADAAPIPVTGPDRFALVGSTP CCHHHCCCCCCEECCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCEEEECCCC RPYAMNRHRVSDYAIFAQDRVDLGRAWKLLGGLRGERFDVDSTNALNGLHARRTTAAWSP CCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCEECCCCCCCCCCCHHHCCCCCCCC RLGVVWSPVGTHSLYASYSKNFAPVGGDLIGITPDARGNANDLGPQYTRQYEIGVKSDWR CCCEEECCCCCHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCC DGALSTTLALFQLDLYNRRIADPVRPGFFDLTGLERNRGLELGVAGRLAGDWFVRGGIGW CCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCEEEECCEECCCEEEECCCCC QHARVVDAEPKYAGKRSAGVSASNGSLFVGHAPLRGFFAELGLVYEGARYADRDNLLELP CEEEEECCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCEEECC AYVRWDGKAGYRTRDFEVTLAAVNLTDRDYYANATGLAQIMPGTPRTFTLTAAYKF CEEEECCCCCCEEECEEEEEEEEEECCCCCCCCCCCHHEECCCCCCEEEEEEEECC >Mature Secondary Structure STATRTASDPRDVPQTIDSVPVEETLSYGGRTLADALAGVPGVSNTSDTRFDSFRIRGF CCCCCCCCCCHHHHHHHHCCCHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEE SAAGDLLLDGMRDDAQYVRSLSNIERVEVLKGPAAALYGRGSGGGVINRITKQPLPENFG CCCCHHHHCCCCHHHHHHHHHHCCHHHHHHCCCCCEEEECCCCCCHHHHHHCCCCCCCCC HLSAATGSYGRLGASVDLNRMLSSAWSVRLNAGREHAGSFRDHVDSTRQYVAPSIKWHDA CEEECCCCCCCCCCCCCHHHHHHHHHEEEEECCCHHCCHHHHHHHHHHHHHCCCCEEECC RRSWLLQFEYDAYRRVPDRGMPAPVAALDAAGKPFAFSLPSAPRATFFGAAGRDTIRDEN CCEEEEEEECHHHHCCCCCCCCCCHHHHHCCCCCEEEECCCCCCCEEECCCCCCCCCCCC MNWRSVFTHALDGDWELRHTLGVLNLRSTFDNTYVTQSYVAKPRDYRHVQRARYLQDMTH CCHHHHHHHHCCCCEEEHHHHHHEEHHHHCCCCCEEHHHHCCCHHHHHHHHHHHHHHHHH LNVQTGVELGGKVATGPALHHLLFGIEYGWQKRAPTLWQADAAPIPVTGPDRFALVGSTP CCHHHCCCCCCEECCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCEEEECCCC RPYAMNRHRVSDYAIFAQDRVDLGRAWKLLGGLRGERFDVDSTNALNGLHARRTTAAWSP CCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCEECCCCCCCCCCCHHHCCCCCCCC RLGVVWSPVGTHSLYASYSKNFAPVGGDLIGITPDARGNANDLGPQYTRQYEIGVKSDWR CCCEEECCCCCHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCC DGALSTTLALFQLDLYNRRIADPVRPGFFDLTGLERNRGLELGVAGRLAGDWFVRGGIGW CCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCEEEECCEECCCEEEECCCCC QHARVVDAEPKYAGKRSAGVSASNGSLFVGHAPLRGFFAELGLVYEGARYADRDNLLELP CEEEEECCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCEEECC AYVRWDGKAGYRTRDFEVTLAAVNLTDRDYYANATGLAQIMPGTPRTFTLTAAYKF CEEEECCCCCCEEECEEEEEEEEEECCCCCCCCCCCHHEECCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]