Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is pld [H]
Identifier: 116689607
GI number: 116689607
Start: 1745932
End: 1746555
Strand: Reverse
Name: pld [H]
Synonym: Bcen2424_1585
Alternate gene names: 116689607
Gene position: 1746555-1745932 (Counterclockwise)
Preceding gene: 116689608
Following gene: 116689601
Centisome position: 50.13
GC content: 64.74
Gene sequence:
>624_bases ATGTTGTCGCGCAATCGCCTCGCTGCCGCCTGTCTCGCCGCTTCCCTGCTCGCCACCCCGTTCGCCGCCTTCGGCAAGAC GCAAAACGAATCGCTGCTCCAGCAAGCGATCGATCTCGTGTCGCGATGGCTGCCGGCTCCTACTCACGAAGCACCCGCGA CCCAGGTCGTCGAATCGGCCTTCTCGCCGGACGGCGGCGCCGAGGCGCTCGTACTGAAAGCGATCGGCGCGGCGCGCAAC TCGATCCGGGTTGCCGCCTACTCGTTCACGTCGCCGCCCGTCACGCGTGCATTGCTTGCCGCCAAGCGCCGCGGCGTCAA TGTCGCGGTGGTCGTCGACGACAAGGGCAACCGCGCGAAGAACAGCAAGCAGGCACTGAACCTGCTCGTCAACGCGGGCA TTCCGACGCGCACGATCGACGCCTATGCGATCCATCACGACAAGTACCTCGTGATCGACGCCGAGCACGTCGAAACGGGT TCGTTCAACTACAGCGCGTCGGCAGCCAGCCGCAATTCCGAGAACGTCGTCGTGGTCTGGAACAATCCGCAACTCGCGTC GCGCTACCTCACGCACTGGCAAAGCCGCTTCGATCAAGGCACGCCGTACCGCTCCAGCTACTGA
Upstream 100 bases:
>100_bases GATCATCGCGTGGACCAGCGCTTCGCATCCGCACGTGACCGGGCCGCCACGCGTGCGTTACACTCACGGCCCGCTGTCTC GAAATTATTCGCTGTCCAAG
Downstream 100 bases:
>100_bases CGCGCGACACGCGCTCGCCGCCCCACCGCTCACATTCGCGTCACCGTGTTGCAGATGATCGGCGAGCATGGCGCGATGTT CAATTCGGCCGAATGGCCAG
Product: phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthases like enzyme
Products: NA
Alternate protein names: PLD; Choline phosphatase [H]
Number of amino acids: Translated: 207; Mature: 207
Protein sequence:
>207_residues MLSRNRLAAACLAASLLATPFAAFGKTQNESLLQQAIDLVSRWLPAPTHEAPATQVVESAFSPDGGAEALVLKAIGAARN SIRVAAYSFTSPPVTRALLAAKRRGVNVAVVVDDKGNRAKNSKQALNLLVNAGIPTRTIDAYAIHHDKYLVIDAEHVETG SFNYSASAASRNSENVVVVWNNPQLASRYLTHWQSRFDQGTPYRSSY
Sequences:
>Translated_207_residues MLSRNRLAAACLAASLLATPFAAFGKTQNESLLQQAIDLVSRWLPAPTHEAPATQVVESAFSPDGGAEALVLKAIGAARN SIRVAAYSFTSPPVTRALLAAKRRGVNVAVVVDDKGNRAKNSKQALNLLVNAGIPTRTIDAYAIHHDKYLVIDAEHVETG SFNYSASAASRNSENVVVVWNNPQLASRYLTHWQSRFDQGTPYRSSY >Mature_207_residues MLSRNRLAAACLAASLLATPFAAFGKTQNESLLQQAIDLVSRWLPAPTHEAPATQVVESAFSPDGGAEALVLKAIGAARN SIRVAAYSFTSPPVTRALLAAKRRGVNVAVVVDDKGNRAKNSKQALNLLVNAGIPTRTIDAYAIHHDKYLVIDAEHVETG SFNYSASAASRNSENVVVVWNNPQLASRYLTHWQSRFDQGTPYRSSY
Specific function: Could be a virulence factor [H]
COG id: COG1502
COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes
Gene ontology:
Cell location: Secreted (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PLD phosphodiesterase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001736 [H]
Pfam domain/function: NA
EC number: =3.1.4.4 [H]
Molecular weight: Translated: 22333; Mature: 22333
Theoretical pI: Translated: 9.99; Mature: 9.99
Prosite motif: PS50035 PLD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSRNRLAAACLAASLLATPFAAFGKTQNESLLQQAIDLVSRWLPAPTHEAPATQVVESA CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH FSPDGGAEALVLKAIGAARNSIRVAAYSFTSPPVTRALLAAKRRGVNVAVVVDDKGNRAK CCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCC NSKQALNLLVNAGIPTRTIDAYAIHHDKYLVIDAEHVETGSFNYSASAASRNSENVVVVW HHHHHHHHHHCCCCCCCEEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEE NNPQLASRYLTHWQSRFDQGTPYRSSY CCCHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MLSRNRLAAACLAASLLATPFAAFGKTQNESLLQQAIDLVSRWLPAPTHEAPATQVVESA CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH FSPDGGAEALVLKAIGAARNSIRVAAYSFTSPPVTRALLAAKRRGVNVAVVVDDKGNRAK CCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCC NSKQALNLLVNAGIPTRTIDAYAIHHDKYLVIDAEHVETGSFNYSASAASRNSENVVVVW HHHHHHHHHHCCCCCCCEEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEE NNPQLASRYLTHWQSRFDQGTPYRSSY CCCHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA