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The map label for this gene is yecS [H]

Identifier: 116689574

GI number: 116689574

Start: 1718634

End: 1719326

Strand: Reverse

Name: yecS [H]

Synonym: Bcen2424_1552

Alternate gene names: 116689574

Gene position: 1719326-1718634 (Counterclockwise)

Preceding gene: 116689575

Following gene: 116689567

Centisome position: 49.35

GC content: 67.82

Gene sequence:

>693_bases
ATGTCGACAACGTCCCTGCTCGTCCAATCGCTGCCGGTGCTCGCCCAGGGCGCCGTCCTGACCGTCAAGTTCGCCGTGCT
GTCGATGGTGTTCGGCCTGCTTGGCGCCGTCGTGCTCGCGATGATGGGCATCCGGCAGAGCGAAGCGCTCGACGGCTTCG
AGCGCATCTGGGTCAACGCGCTCGCGTGGCTGGCACGCGCGTACGTGAGCCTGATGCGCGGCACGCCGCTGCTCGTGCAG
ATCTTCGTCATCTATTACGGGCTGCCGAGCCTCGGCATCTCGCTCGATCCGACGCCGGCCGGCGTCATCGCGCTGTCCGC
GAACGTCGCGGCCTACATGTCGGAAAGCATGCGCGGCGCGATCAACGGGATCGCGCGCGGCCAGTGGCTCGCCGCGTACA
GCCTCGGGCTGTCGTGGGGGCAGACGCTGCGCTACGTGATCGGCCCGCAGGCGCTGCGCATCGCGGTGCCGAGCCTGTCG
AACAGCCTGATCAGCCTGATCAAGGACACGTCGCTCGTGTCCGTGATCACCGTGACCGAACTGCTGCGCAGCGCGCAGGA
AGTGATCGCGGCGACCTATCAGCCGCTGCCGCTCTATCTCGCCGCCGCGGCCGTGTACTGGGTCCTGTGCCAGATCCTCG
AATGGGGGCAGCGCTGGTACGAAAAGCGCCTGTCGCTGCCGTCGCGGCACTGA

Upstream 100 bases:

>100_bases
ACGGCGGGCCGGAAAGGGCGGCATCCGCAACGATGCCGCCCTTTGTTTTATCGGCCCGGTTTATGATTGCGCTTTCGCGC
ACGCATTCGATTCGCACTCC

Downstream 100 bases:

>100_bases
GCCGCGCCGTTGCGCCGGGCCGCGGTCCCGGCGCCCGCCTTCCCGCCTGTTCCGTCTATTCGCCCGAATAACGCACACCG
AGCACGGCGCGCGCCGCATC

Product: polar amino acid ABC transporter, inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MSTTSLLVQSLPVLAQGAVLTVKFAVLSMVFGLLGAVVLAMMGIRQSEALDGFERIWVNALAWLARAYVSLMRGTPLLVQ
IFVIYYGLPSLGISLDPTPAGVIALSANVAAYMSESMRGAINGIARGQWLAAYSLGLSWGQTLRYVIGPQALRIAVPSLS
NSLISLIKDTSLVSVITVTELLRSAQEVIAATYQPLPLYLAAAAVYWVLCQILEWGQRWYEKRLSLPSRH

Sequences:

>Translated_230_residues
MSTTSLLVQSLPVLAQGAVLTVKFAVLSMVFGLLGAVVLAMMGIRQSEALDGFERIWVNALAWLARAYVSLMRGTPLLVQ
IFVIYYGLPSLGISLDPTPAGVIALSANVAAYMSESMRGAINGIARGQWLAAYSLGLSWGQTLRYVIGPQALRIAVPSLS
NSLISLIKDTSLVSVITVTELLRSAQEVIAATYQPLPLYLAAAAVYWVLCQILEWGQRWYEKRLSLPSRH
>Mature_229_residues
STTSLLVQSLPVLAQGAVLTVKFAVLSMVFGLLGAVVLAMMGIRQSEALDGFERIWVNALAWLARAYVSLMRGTPLLVQI
FVIYYGLPSLGISLDPTPAGVIALSANVAAYMSESMRGAINGIARGQWLAAYSLGLSWGQTLRYVIGPQALRIAVPSLSN
SLISLIKDTSLVSVITVTELLRSAQEVIAATYQPLPLYLAAAAVYWVLCQILEWGQRWYEKRLSLPSRH

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=229, Percent_Identity=44.9781659388646, Blast_Score=196, Evalue=1e-51,
Organism=Escherichia coli, GI1787030, Length=220, Percent_Identity=37.2727272727273, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1787086, Length=227, Percent_Identity=31.7180616740088, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787087, Length=224, Percent_Identity=32.5892857142857, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1786873, Length=214, Percent_Identity=34.1121495327103, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788645, Length=220, Percent_Identity=33.1818181818182, Blast_Score=96, Evalue=1e-21,
Organism=Escherichia coli, GI1788646, Length=234, Percent_Identity=28.6324786324786, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI87082239, Length=171, Percent_Identity=33.9181286549708, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1786874, Length=182, Percent_Identity=27.4725274725275, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI48994930, Length=213, Percent_Identity=28.6384976525822, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24941; Mature: 24810

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTTSLLVQSLPVLAQGAVLTVKFAVLSMVFGLLGAVVLAMMGIRQSEALDGFERIWVNA
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
LAWLARAYVSLMRGTPLLVQIFVIYYGLPSLGISLDPTPAGVIALSANVAAYMSESMRGA
HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHH
INGIARGQWLAAYSLGLSWGQTLRYVIGPQALRIAVPSLSNSLISLIKDTSLVSVITVTE
HHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
LLRSAQEVIAATYQPLPLYLAAAAVYWVLCQILEWGQRWYEKRLSLPSRH
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
STTSLLVQSLPVLAQGAVLTVKFAVLSMVFGLLGAVVLAMMGIRQSEALDGFERIWVNA
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
LAWLARAYVSLMRGTPLLVQIFVIYYGLPSLGISLDPTPAGVIALSANVAAYMSESMRGA
HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHH
INGIARGQWLAAYSLGLSWGQTLRYVIGPQALRIAVPSLSNSLISLIKDTSLVSVITVTE
HHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
LLRSAQEVIAATYQPLPLYLAAAAVYWVLCQILEWGQRWYEKRLSLPSRH
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]