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The map label for this gene is dgoR [H]

Identifier: 116689572

GI number: 116689572

Start: 1716774

End: 1717490

Strand: Direct

Name: dgoR [H]

Synonym: Bcen2424_1550

Alternate gene names: 116689572

Gene position: 1716774-1717490 (Clockwise)

Preceding gene: 116689571

Following gene: 116689573

Centisome position: 49.28

GC content: 65.27

Gene sequence:

>717_bases
ATGGAGCAGGGCAAAGACCGGTCACTGGTCGCCAAAGTGATGGATGGGCTTGTCGCGGGTATCGTCGAAGACAAGTACGG
CGGCATCTTGCCGCCACAGGACGTGCTGTCGAAAGAGTTCGATGTGAGCCGCACGGTGATGCGGGAAGCGTTGTCGATGT
TGCTTGCGCGCGACATGCTCGACGTGCGTCCGAAAGTCGGGACGCGCGTGCGGCCGATGCGCGACTGGCGGATGATCGAC
GAAGACGTCGTGAGCTGGCGATTTCGGGCAAAGCCCGATCCGCAGTTCATGCGCGACGTCATCGAATTCCGGATGCTGAT
CGAACCACGCGCGACCGCGCAGGCGGCGGTGCGTGCGACGGCGGCCGACATTGCGGGCATTCGCGAAGCGTTCGATGCGT
TCAAGGTGCTGCAGCCGGGCGACCCCGGCTACGACACGGCGGACGAGCTGCTGCATACGCGGATCGTCCAGGCGAGCGGC
AACCAGTTCTTCCAGCAGATGGCGGCGATCGTGCGCGGAGCAGTGCGTCTCGTGAATCCGCGTGTCGTGCAGAAGGAAGG
CGCGCACGACATCGCGGTGAAGGCGCATGCGCGGGTCGTCGATGCGATCGAGCGGCGCGACCCGCGCGAAGCCGAGGCGG
CGTCGCTCGCGCTGATCGATTTCAGCGCGGACGAGATTTCGCGCGATTTCTCGGTCGACGTGCCGGTGCGTGCCTGA

Upstream 100 bases:

>100_bases
CGTCGAACTCATCAACTTATAGATCATAAGAACAGAGTAGTAACCAGGGCCGGCGGAACTGCGGAGCAGGTGTTCGCAAA
TCGACGCACGGGGAGGTGTC

Downstream 100 bases:

>100_bases
CGCGGCACGTGTCGCTCATCCGTGTGCCGCCGGGCCGTTTATCATGACGGCCGGCCGGCAGCGTGCCGGCTACCGTCATA
CGACCGACACGGAAGATCAG

Product: GntR domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MEQGKDRSLVAKVMDGLVAGIVEDKYGGILPPQDVLSKEFDVSRTVMREALSMLLARDMLDVRPKVGTRVRPMRDWRMID
EDVVSWRFRAKPDPQFMRDVIEFRMLIEPRATAQAAVRATAADIAGIREAFDAFKVLQPGDPGYDTADELLHTRIVQASG
NQFFQQMAAIVRGAVRLVNPRVVQKEGAHDIAVKAHARVVDAIERRDPREAEAASLALIDFSADEISRDFSVDVPVRA

Sequences:

>Translated_238_residues
MEQGKDRSLVAKVMDGLVAGIVEDKYGGILPPQDVLSKEFDVSRTVMREALSMLLARDMLDVRPKVGTRVRPMRDWRMID
EDVVSWRFRAKPDPQFMRDVIEFRMLIEPRATAQAAVRATAADIAGIREAFDAFKVLQPGDPGYDTADELLHTRIVQASG
NQFFQQMAAIVRGAVRLVNPRVVQKEGAHDIAVKAHARVVDAIERRDPREAEAASLALIDFSADEISRDFSVDVPVRA
>Mature_238_residues
MEQGKDRSLVAKVMDGLVAGIVEDKYGGILPPQDVLSKEFDVSRTVMREALSMLLARDMLDVRPKVGTRVRPMRDWRMID
EDVVSWRFRAKPDPQFMRDVIEFRMLIEPRATAQAAVRATAADIAGIREAFDAFKVLQPGDPGYDTADELLHTRIVQASG
NQFFQQMAAIVRGAVRLVNPRVVQKEGAHDIAVKAHARVVDAIERRDPREAEAASLALIDFSADEISRDFSVDVPVRA

Specific function: Repressor for the dgoRKAT operon. Binds D-galactonate as an inducer [H]

COG id: COG2186

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48994955, Length=211, Percent_Identity=29.3838862559242, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI48994961, Length=227, Percent_Identity=27.3127753303965, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26582; Mature: 26582

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQGKDRSLVAKVMDGLVAGIVEDKYGGILPPQDVLSKEFDVSRTVMREALSMLLARDML
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DVRPKVGTRVRPMRDWRMIDEDVVSWRFRAKPDPQFMRDVIEFRMLIEPRATAQAAVRAT
HCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
AADIAGIREAFDAFKVLQPGDPGYDTADELLHTRIVQASGNQFFQQMAAIVRGAVRLVNP
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC
RVVQKEGAHDIAVKAHARVVDAIERRDPREAEAASLALIDFSADEISRDFSVDVPVRA
HHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHEEEEEECCHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MEQGKDRSLVAKVMDGLVAGIVEDKYGGILPPQDVLSKEFDVSRTVMREALSMLLARDML
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DVRPKVGTRVRPMRDWRMIDEDVVSWRFRAKPDPQFMRDVIEFRMLIEPRATAQAAVRAT
HCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
AADIAGIREAFDAFKVLQPGDPGYDTADELLHTRIVQASGNQFFQQMAAIVRGAVRLVNP
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC
RVVQKEGAHDIAVKAHARVVDAIERRDPREAEAASLALIDFSADEISRDFSVDVPVRA
HHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHEEEEEECCHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]