| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is yfiI [H]
Identifier: 116689452
GI number: 116689452
Start: 1578123
End: 1579295
Strand: Direct
Name: yfiI [H]
Synonym: Bcen2424_1430
Alternate gene names: 116689452
Gene position: 1578123-1579295 (Clockwise)
Preceding gene: 116689451
Following gene: 116689453
Centisome position: 45.3
GC content: 67.6
Gene sequence:
>1173_bases ATGATTGACGGACAGATTCTGCTTGGCCATTCGATTCGCTGGGGCATGGTCGGCGGCGGGCTCGGCAGCCAGATCGGCTA CAGCCACCGGTCGGCCGCGCTGCGCGACGGCAGCTTCCAGTTGGTTGCCGGCGCATTCGACATCGATCCCGAGCGCGGCC GCCAGTTCGGCGTGAAGCTCGGCGTCGCGGCCGAGCGCTGCTATCCCGACTACGCGACGATGTTCGACGCCGAGGCGCGT CGCCCCGACGGCATTCGTGCGGTGTCGATCGCGACGCCGAACAACACGCACTTCGAGATCTGCCGTGCCGCGCTGAACGC CGGGCTGCACGTGGTCTGCGAGAAGCCGCTGTGCTTCACGACCGAGGAGGCCGAGGCGCTGCAGCGCCTGTCGGTCGAGA AAAACCGGATCGTCGGCGTCGCGTACGGCTATTCCGGACACCAGATGATCGAGCAGGCGCGCGAGATGATCGCGCGCGGC GACCTCGGCGAGATCCGCATCGTGCAGATGCAGTTCGCGCACGGCTTCCACAGTGAAGGCGTCGAGGCCGCGAGCGCGGC CGCGCGCTGGCGCGTCGATCCGAAGTTCGCCGGCCCGAGCTACGTGCTCGGCGACATCGGCACGCATCCGCTGTACATCT CCGAGGTGATGGCGCCGGAACTGAAGATCCGGCGGCTGATGTGTTCGCGGCAGAGCTTCGTGAAGAGCCGCGCGCCGCTC GAGGACAACGCGTTCACGATCATGGAGTACGACACCGGCGCGATCGGCTACGTGTGGTCGAGCGCGGTGAACGCCGGTTC GATGCACGGGCAGAAGGTGCGCGTGATCGGCTCGAAGGCGAGCGTCGAATGGTGGGACGAGCATCCGAACCAGTTGCGCT ACGAAATCCAGGGGCAGCCCGCGCAGGTGCTCGATCGCGGGATGCCGTACCTGCATCCGAACGCCACGCGCGAAGACCGC ATCGGCGCCGGGCATCCGGAAGGGCTGTTCGAGGCATGGTCGAACCTGTACGCGCGCTTCGCACTCGCGATGGATGCGGC CGATCGCGGCGACGCCGCGGCGGTGAAGGCTATCCGCATTCCGGACGTCCACGCGGGCGTCGAGGGCGTGCGCTGGGTCG AGAATTGCGTGCGTTCGGCCGATGCGGGCGGCGTGTGGGTCGACTATCGTTGA
Upstream 100 bases:
>100_bases ACGCCGGCACGAGCCTGCGCGACGTCGCCGCGAGCCGCGCGTTTCTCGCGTCGGCCGGTTTTGCATGATCCCCTGAACAC GCACCAGGAACACCACCATC
Downstream 100 bases:
>100_bases ACGGAGGCAGGTCGGCTGCACCACGCTTCGCCGCGGCAGCCGGCCTTGGTACACACCCTGATCTTTACGACGCCGCGAGC GCGTTGGACAATCGTTTCCA
Product: oxidoreductase domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 390; Mature: 390
Protein sequence:
>390_residues MIDGQILLGHSIRWGMVGGGLGSQIGYSHRSAALRDGSFQLVAGAFDIDPERGRQFGVKLGVAAERCYPDYATMFDAEAR RPDGIRAVSIATPNNTHFEICRAALNAGLHVVCEKPLCFTTEEAEALQRLSVEKNRIVGVAYGYSGHQMIEQAREMIARG DLGEIRIVQMQFAHGFHSEGVEAASAAARWRVDPKFAGPSYVLGDIGTHPLYISEVMAPELKIRRLMCSRQSFVKSRAPL EDNAFTIMEYDTGAIGYVWSSAVNAGSMHGQKVRVIGSKASVEWWDEHPNQLRYEIQGQPAQVLDRGMPYLHPNATREDR IGAGHPEGLFEAWSNLYARFALAMDAADRGDAAAVKAIRIPDVHAGVEGVRWVENCVRSADAGGVWVDYR
Sequences:
>Translated_390_residues MIDGQILLGHSIRWGMVGGGLGSQIGYSHRSAALRDGSFQLVAGAFDIDPERGRQFGVKLGVAAERCYPDYATMFDAEAR RPDGIRAVSIATPNNTHFEICRAALNAGLHVVCEKPLCFTTEEAEALQRLSVEKNRIVGVAYGYSGHQMIEQAREMIARG DLGEIRIVQMQFAHGFHSEGVEAASAAARWRVDPKFAGPSYVLGDIGTHPLYISEVMAPELKIRRLMCSRQSFVKSRAPL EDNAFTIMEYDTGAIGYVWSSAVNAGSMHGQKVRVIGSKASVEWWDEHPNQLRYEIQGQPAQVLDRGMPYLHPNATREDR IGAGHPEGLFEAWSNLYARFALAMDAADRGDAAAVKAIRIPDVHAGVEGVRWVENCVRSADAGGVWVDYR >Mature_390_residues MIDGQILLGHSIRWGMVGGGLGSQIGYSHRSAALRDGSFQLVAGAFDIDPERGRQFGVKLGVAAERCYPDYATMFDAEAR RPDGIRAVSIATPNNTHFEICRAALNAGLHVVCEKPLCFTTEEAEALQRLSVEKNRIVGVAYGYSGHQMIEQAREMIARG DLGEIRIVQMQFAHGFHSEGVEAASAAARWRVDPKFAGPSYVLGDIGTHPLYISEVMAPELKIRRLMCSRQSFVKSRAPL EDNAFTIMEYDTGAIGYVWSSAVNAGSMHGQKVRVIGSKASVEWWDEHPNQLRYEIQGQPAQVLDRGMPYLHPNATREDR IGAGHPEGLFEAWSNLYARFALAMDAADRGDAAAVKAIRIPDVHAGVEGVRWVENCVRSADAGGVWVDYR
Specific function: Unknown
COG id: COG0673
COG function: function code R; Predicted dehydrogenases and related proteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the gfo/idh/mocA family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016040 - InterPro: IPR000683 - InterPro: IPR004104 [H]
Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 42831; Mature: 42831
Theoretical pI: Translated: 6.57; Mature: 6.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIDGQILLGHSIRWGMVGGGLGSQIGYSHRSAALRDGSFQLVAGAFDIDPERGRQFGVKL CCCCEEEECCCEEEEEECCCCCCCCCCCHHHHHCCCCCEEEEEEEECCCHHHCCEECEEE GVAAERCYPDYATMFDAEARRPDGIRAVSIATPNNTHFEICRAALNAGLHVVCEKPLCFT CCCHHHHCCCHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCEEEEECCCCEEE TEEAEALQRLSVEKNRIVGVAYGYSGHQMIEQAREMIARGDLGEIRIVQMQFAHGFHSEG CHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCC VEAASAAARWRVDPKFAGPSYVLGDIGTHPLYISEVMAPELKIRRLMCSRQSFVKSRAPL CHHHHHHHHCCCCCCCCCCCEEECCCCCCCEEHHHHHCHHHHHHHHHHHHHHHHHHCCCC EDNAFTIMEYDTGAIGYVWSSAVNAGSMHGQKVRVIGSKASVEWWDEHPNQLRYEIQGQP CCCCEEEEEECCCCHHHHHHHHCCCCCCCCCEEEEEECCCCEEHHCCCCCEEEEEECCCC AQVLDRGMPYLHPNATREDRIGAGHPEGLFEAWSNLYARFALAMDAADRGDAAAVKAIRI HHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEC PDVHAGVEGVRWVENCVRSADAGGVWVDYR CCHHCCHHHHHHHHHHHHCCCCCCEEEECC >Mature Secondary Structure MIDGQILLGHSIRWGMVGGGLGSQIGYSHRSAALRDGSFQLVAGAFDIDPERGRQFGVKL CCCCEEEECCCEEEEEECCCCCCCCCCCHHHHHCCCCCEEEEEEEECCCHHHCCEECEEE GVAAERCYPDYATMFDAEARRPDGIRAVSIATPNNTHFEICRAALNAGLHVVCEKPLCFT CCCHHHHCCCHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCEEEEECCCCEEE TEEAEALQRLSVEKNRIVGVAYGYSGHQMIEQAREMIARGDLGEIRIVQMQFAHGFHSEG CHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCC VEAASAAARWRVDPKFAGPSYVLGDIGTHPLYISEVMAPELKIRRLMCSRQSFVKSRAPL CHHHHHHHHCCCCCCCCCCCEEECCCCCCCEEHHHHHCHHHHHHHHHHHHHHHHHHCCCC EDNAFTIMEYDTGAIGYVWSSAVNAGSMHGQKVRVIGSKASVEWWDEHPNQLRYEIQGQP CCCCEEEEEECCCCHHHHHHHHCCCCCCCCCEEEEEECCCCEEHHCCCCCEEEEEECCCC AQVLDRGMPYLHPNATREDRIGAGHPEGLFEAWSNLYARFALAMDAADRGDAAAVKAIRI HHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEC PDVHAGVEGVRWVENCVRSADAGGVWVDYR CCHHCCHHHHHHHHHHHHCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8973323; 9384377 [H]