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The map label for this gene is intF [H]

Identifier: 116689348

GI number: 116689348

Start: 1458842

End: 1460215

Strand: Reverse

Name: intF [H]

Synonym: Bcen2424_1326

Alternate gene names: 116689348

Gene position: 1460215-1458842 (Counterclockwise)

Preceding gene: 116689349

Following gene: 116689347

Centisome position: 41.91

GC content: 61.43

Gene sequence:

>1374_bases
ATGGCAAAGATTAACTTCACGGCGGACCGGGTCGCGTCATTTGAAGCCGCATCCGGTAAGAATCAGACGATTTATTGGGA
CGCAAAGGCTCCGGGATTGGGCGTGCGAGTGACGCCCGGCGGAGCTCGCACCTACGTCTACGAATCACGCCTGTTCGGCA
AAACCATCCGCATGACCATCGGCGACGCACGGGCGTGGACGCTCGGTAAGGCCCGCACCGAAGCCGCACGTCTTAAGACG
GCGATTGATGATGGTATCGACCCGCGCGAACAAGCCGCCGAGCAACGCGCTGCCTACGAAGCGCGGAAAGCCGAAGCAAA
ACGACAGGATGCGACCGTACGCGAAGCGTGGGCGGCTTATCTTGACGCAAACCGGTCCCGATGGAGCGAGCGCCATCTAT
CCGACCATGAGAATCTGGCCCACGCGGGCGGCGAGCCGAGAAAGCGCGGAAAAGGCACGACGGTTGCCGGGCCGCTCGCC
GCGCTCATGGCGTTGAAGCTGTCGAACTTGACCGCCGAGGCGGTCGCCGCATGGCTCGAATCCGAATCGCAAACGCGCCC
GACCAACGCCGAGCAGAGCTATCGCAAGCTGCGCGCGCTCATCCGCTGGTGTAACGACCGGCCGGAATACGCCGGCATCA
TTCCGCCGAACGCATATAACGCGCGCGCCGTTCGAAGCGCTGTGCCGCGTACCAAGGCGAAAGATGATTGCCTGCAACGG
GAGCAGCTATCGGCGTGGTTCGACGCCGTCCGCAAGCTAGGCAACCCGGTCATTGCGACTTATCTGCAAGCGCTACTCAT
TACAGGCGCGCGCCGCGAGGAAATCGCCGCGCTTCGATGGACCGATGTCGATTTTCAATGGCGCTCGCTGTCCATCGCCG
ACAAGGTCGAAGGCTCGCGCGTCATCCCCCTTACCCCGTACCTCGCGAGCATCCTGCGGGAACTCAAACGTTTGAACGAC
ACGCCGCCGAGCATCCGCCAAATACGGGACCTGACTGCCAAAGGCGAATCATGGTCGCCCTCCCCGTGGGTTTTCGCGAG
CAAAAAGTCGGCAGACGGAAAAATCGCCGAGCCGCGTATTGCGCATAATCAAGCGCTCGCGGTAGCCGGCCTTCCCCATC
TGAGCCTGCACGGACTTCGGCGTTCGTTCGGAACGCTTTCCGAATGGGTGGGATGTCCGGTCGGCGTCGTCGCCCAAATT
CAAGGTCACAAGCCGTCAGCCATTGCCGAAAAGCACTACCGTCGCCGCCCGCTCGATCTGCTGCGCACGTGGCACGACGA
GATTGAAGCGTGGATGCTTGCGCAAACTGGTGTTGAATTCTCATCGCCCCAAACTGCGACAACGTTGCGGATCGCTGGCA
ATCACAACAAATAG

Upstream 100 bases:

>100_bases
CCGCCTTAACCTTCGGCCTTTTTGCGTTGACCTAGATGGATCAATTTGCCCATAATTTGCCTACACGGTGCCTACACGGA
TTTGGCCCCAAGGAGCGGCA

Downstream 100 bases:

>100_bases
CTATTCCGCAAAGTAATCGATAGAAAATTTTCATCGCCATGGCACAATCCCAAATTCCGCCCGATTCCTTCGGGCGCAAT
ATCGCGTGTCGCACATATAT

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 457; Mature: 456

Protein sequence:

>457_residues
MAKINFTADRVASFEAASGKNQTIYWDAKAPGLGVRVTPGGARTYVYESRLFGKTIRMTIGDARAWTLGKARTEAARLKT
AIDDGIDPREQAAEQRAAYEARKAEAKRQDATVREAWAAYLDANRSRWSERHLSDHENLAHAGGEPRKRGKGTTVAGPLA
ALMALKLSNLTAEAVAAWLESESQTRPTNAEQSYRKLRALIRWCNDRPEYAGIIPPNAYNARAVRSAVPRTKAKDDCLQR
EQLSAWFDAVRKLGNPVIATYLQALLITGARREEIAALRWTDVDFQWRSLSIADKVEGSRVIPLTPYLASILRELKRLND
TPPSIRQIRDLTAKGESWSPSPWVFASKKSADGKIAEPRIAHNQALAVAGLPHLSLHGLRRSFGTLSEWVGCPVGVVAQI
QGHKPSAIAEKHYRRRPLDLLRTWHDEIEAWMLAQTGVEFSSPQTATTLRIAGNHNK

Sequences:

>Translated_457_residues
MAKINFTADRVASFEAASGKNQTIYWDAKAPGLGVRVTPGGARTYVYESRLFGKTIRMTIGDARAWTLGKARTEAARLKT
AIDDGIDPREQAAEQRAAYEARKAEAKRQDATVREAWAAYLDANRSRWSERHLSDHENLAHAGGEPRKRGKGTTVAGPLA
ALMALKLSNLTAEAVAAWLESESQTRPTNAEQSYRKLRALIRWCNDRPEYAGIIPPNAYNARAVRSAVPRTKAKDDCLQR
EQLSAWFDAVRKLGNPVIATYLQALLITGARREEIAALRWTDVDFQWRSLSIADKVEGSRVIPLTPYLASILRELKRLND
TPPSIRQIRDLTAKGESWSPSPWVFASKKSADGKIAEPRIAHNQALAVAGLPHLSLHGLRRSFGTLSEWVGCPVGVVAQI
QGHKPSAIAEKHYRRRPLDLLRTWHDEIEAWMLAQTGVEFSSPQTATTLRIAGNHNK
>Mature_456_residues
AKINFTADRVASFEAASGKNQTIYWDAKAPGLGVRVTPGGARTYVYESRLFGKTIRMTIGDARAWTLGKARTEAARLKTA
IDDGIDPREQAAEQRAAYEARKAEAKRQDATVREAWAAYLDANRSRWSERHLSDHENLAHAGGEPRKRGKGTTVAGPLAA
LMALKLSNLTAEAVAAWLESESQTRPTNAEQSYRKLRALIRWCNDRPEYAGIIPPNAYNARAVRSAVPRTKAKDDCLQRE
QLSAWFDAVRKLGNPVIATYLQALLITGARREEIAALRWTDVDFQWRSLSIADKVEGSRVIPLTPYLASILRELKRLNDT
PPSIRQIRDLTAKGESWSPSPWVFASKKSADGKIAEPRIAHNQALAVAGLPHLSLHGLRRSFGTLSEWVGCPVGVVAQIQ
GHKPSAIAEKHYRRRPLDLLRTWHDEIEAWMLAQTGVEFSSPQTATTLRIAGNHNK

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI2367104, Length=447, Percent_Identity=51.2304250559284, Blast_Score=444, Evalue=1e-126,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 50732; Mature: 50601

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKINFTADRVASFEAASGKNQTIYWDAKAPGLGVRVTPGGARTYVYESRLFGKTIRMTI
CCEECCCHHHHHHHHCCCCCCCEEEEECCCCCCEEEECCCCCEEEEEHHHHHCCEEEEEE
GDARAWTLGKARTEAARLKTAIDDGIDPREQAAEQRAAYEARKAEAKRQDATVREAWAAY
CCCCEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDANRSRWSERHLSDHENLAHAGGEPRKRGKGTTVAGPLAALMALKLSNLTAEAVAAWLE
HHCHHHHHHHHHCCHHHHHHHCCCCCHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHH
SESQTRPTNAEQSYRKLRALIRWCNDRPEYAGIIPPNAYNARAVRSAVPRTKAKDDCLQR
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHH
EQLSAWFDAVRKLGNPVIATYLQALLITGARREEIAALRWTDVDFQWRSLSIADKVEGSR
HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHEEEEEECCCCEEEEECHHHHCCCCE
VIPLTPYLASILRELKRLNDTPPSIRQIRDLTAKGESWSPSPWVFASKKSADGKIAEPRI
EEEECHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCH
AHNQALAVAGLPHLSLHGLRRSFGTLSEWVGCPVGVVAQIQGHKPSAIAEKHYRRRPLDL
HCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCHHH
LRTWHDEIEAWMLAQTGVEFSSPQTATTLRIAGNHNK
HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC
>Mature Secondary Structure 
AKINFTADRVASFEAASGKNQTIYWDAKAPGLGVRVTPGGARTYVYESRLFGKTIRMTI
CEECCCHHHHHHHHCCCCCCCEEEEECCCCCCEEEECCCCCEEEEEHHHHHCCEEEEEE
GDARAWTLGKARTEAARLKTAIDDGIDPREQAAEQRAAYEARKAEAKRQDATVREAWAAY
CCCCEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDANRSRWSERHLSDHENLAHAGGEPRKRGKGTTVAGPLAALMALKLSNLTAEAVAAWLE
HHCHHHHHHHHHCCHHHHHHHCCCCCHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHH
SESQTRPTNAEQSYRKLRALIRWCNDRPEYAGIIPPNAYNARAVRSAVPRTKAKDDCLQR
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHH
EQLSAWFDAVRKLGNPVIATYLQALLITGARREEIAALRWTDVDFQWRSLSIADKVEGSR
HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHEEEEEECCCCEEEEECHHHHCCCCE
VIPLTPYLASILRELKRLNDTPPSIRQIRDLTAKGESWSPSPWVFASKKSADGKIAEPRI
EEEECHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCH
AHNQALAVAGLPHLSLHGLRRSFGTLSEWVGCPVGVVAQIQGHKPSAIAEKHYRRRPLDL
HCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCHHH
LRTWHDEIEAWMLAQTGVEFSSPQTATTLRIAGNHNK
HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]