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The map label for this gene is yvoA [H]

Identifier: 116624234

GI number: 116624234

Start: 6474962

End: 6475753

Strand: Reverse

Name: yvoA [H]

Synonym: Acid_5151

Alternate gene names: 116624234

Gene position: 6475753-6474962 (Counterclockwise)

Preceding gene: 116624236

Following gene: 116624233

Centisome position: 64.98

GC content: 63.38

Gene sequence:

>792_bases
ATGCCCGGCCCACTCGACAAAGACCTGCCGGTGCCCTTGTATCACCAATTGCAGGCGGTACTTAAGGCTGAAATCGAATC
GCGGAAGTGGCGTGCCGATGAGCAACTTCCGAACGAAACCAAGCTGGCTGAACGCTTCGGTGTAAGTAAGATCACGGTCC
GCCAGGCTCTCCAAAAGCTTGCCGATCAAGGCTACATCCGGCGCGAACATGGCCGCGGCACCTTCGTCGCGCGCCGCAAG
TTTGACGAAGGCCCCCGGGAATTGACGAGCTTTACCGAGGAAATGCGGCGGCACGATCTGTCCGCCAGGTCCCGGGTGCT
GGCGCAATATGTAATGGAGGCAGATACGAAGGTGGCCAACGCGCTCGTGATCCCCCTGCAATCGCCGGTCTTCGTGGTCA
AGCGCATCCGGCTGGCCGGCGACGAGCCGATGAGCGTGCAGACCGCCCATATTCCCGCCGTTTTCGTCCCTGGCATCCAG
TTGGCCGAAGACGCTTCGCTCTATGAAGTCCTGCAGAGCCGTTACCAACTCTATCCGGCGCGGGCTCGCGAGACGTATTT
CGTGACGGCCGCCGACGATGCCGCCGCCGCGCTGCTCGGCATTCCCGCCGGTGCTCCGGTTTTCGCCGTCGAGCGTGTCA
CGCGACTGCCCAATGAGCGCCCCTTCGAATTCGTGCAATCGATCGTGCGCAGCGACCGGTACAGCATCGTGCTCGACCTG
GTGAAGCCCGACGCGGCCAGCCACTCCGGGACGGTCAGCGCCCTGCGACCCTCCCGCCACGCGACTCCGTAG

Upstream 100 bases:

>100_bases
GAAAAATACACGCGAGCGGCTTCAATTTGCCTCCCAAAAACATGGTCTAAGACCTCCTTGCAATTTGACAAGATTATGTC
ATCCTAAACATAGGATGTCA

Downstream 100 bases:

>100_bases
GAGTACCGATCCAATACGGGCGAACGTGGATCGCGCAAAGCAATAGCGACCGCGTTCAAGGGAACGCCCGTTGAGCATGC
CTAGAAAACCATCCCTCGAG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MPGPLDKDLPVPLYHQLQAVLKAEIESRKWRADEQLPNETKLAERFGVSKITVRQALQKLADQGYIRREHGRGTFVARRK
FDEGPRELTSFTEEMRRHDLSARSRVLAQYVMEADTKVANALVIPLQSPVFVVKRIRLAGDEPMSVQTAHIPAVFVPGIQ
LAEDASLYEVLQSRYQLYPARARETYFVTAADDAAAALLGIPAGAPVFAVERVTRLPNERPFEFVQSIVRSDRYSIVLDL
VKPDAASHSGTVSALRPSRHATP

Sequences:

>Translated_263_residues
MPGPLDKDLPVPLYHQLQAVLKAEIESRKWRADEQLPNETKLAERFGVSKITVRQALQKLADQGYIRREHGRGTFVARRK
FDEGPRELTSFTEEMRRHDLSARSRVLAQYVMEADTKVANALVIPLQSPVFVVKRIRLAGDEPMSVQTAHIPAVFVPGIQ
LAEDASLYEVLQSRYQLYPARARETYFVTAADDAAAALLGIPAGAPVFAVERVTRLPNERPFEFVQSIVRSDRYSIVLDL
VKPDAASHSGTVSALRPSRHATP
>Mature_262_residues
PGPLDKDLPVPLYHQLQAVLKAEIESRKWRADEQLPNETKLAERFGVSKITVRQALQKLADQGYIRREHGRGTFVARRKF
DEGPRELTSFTEEMRRHDLSARSRVLAQYVMEADTKVANALVIPLQSPVFVVKRIRLAGDEPMSVQTAHIPAVFVPGIQL
AEDASLYEVLQSRYQLYPARARETYFVTAADDAAAALLGIPAGAPVFAVERVTRLPNERPFEFVQSIVRSDRYSIVLDLV
KPDAASHSGTVSALRPSRHATP

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786950, Length=231, Percent_Identity=29.004329004329, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI87082252, Length=229, Percent_Identity=25.764192139738, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1788418, Length=228, Percent_Identity=28.0701754385965, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1790118, Length=215, Percent_Identity=24.6511627906977, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1790540, Length=228, Percent_Identity=23.6842105263158, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 29408; Mature: 29277

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGPLDKDLPVPLYHQLQAVLKAEIESRKWRADEQLPNETKLAERFGVSKITVRQALQKL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHCCHHHHHHHHHHHH
ADQGYIRREHGRGTFVARRKFDEGPRELTSFTEEMRRHDLSARSRVLAQYVMEADTKVAN
HHCCCEEECCCCCEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALVIPLQSPVFVVKRIRLAGDEPMSVQTAHIPAVFVPGIQLAEDASLYEVLQSRYQLYPA
EEEEECCCHHHHHHHHHHCCCCCCEEEEECCCEEEECCCHHHCCHHHHHHHHHHHHHCCC
RARETYFVTAADDAAAALLGIPAGAPVFAVERVTRLPNERPFEFVQSIVRSDRYSIVLDL
CCCCEEEEEECCCHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEE
VKPDAASHSGTVSALRPSRHATP
ECCCCCCCCCCHHHCCCCCCCCC
>Mature Secondary Structure 
PGPLDKDLPVPLYHQLQAVLKAEIESRKWRADEQLPNETKLAERFGVSKITVRQALQKL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHCCHHHHHHHHHHHH
ADQGYIRREHGRGTFVARRKFDEGPRELTSFTEEMRRHDLSARSRVLAQYVMEADTKVAN
HHCCCEEECCCCCEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALVIPLQSPVFVVKRIRLAGDEPMSVQTAHIPAVFVPGIQLAEDASLYEVLQSRYQLYPA
EEEEECCCHHHHHHHHHHCCCCCCEEEEECCCEEEECCCHHHCCHHHHHHHHHHHHHCCC
RARETYFVTAADDAAAALLGIPAGAPVFAVERVTRLPNERPFEFVQSIVRSDRYSIVLDL
CCCCEEEEEECCCHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEE
VKPDAASHSGTVSALRPSRHATP
ECCCCCCCCCCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]