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The map label for this gene is rpoE [H]

Identifier: 116624219

GI number: 116624219

Start: 6457060

End: 6457587

Strand: Reverse

Name: rpoE [H]

Synonym: Acid_5135

Alternate gene names: 116624219

Gene position: 6457587-6457060 (Counterclockwise)

Preceding gene: 116624220

Following gene: 116624218

Centisome position: 64.8

GC content: 66.86

Gene sequence:

>528_bases
ATGATGCAGACGATGGCGATGCCTGCGGATGCTTCCGAAGACGACGGGCTGGTTTGCGCGGCGATCGCCGGCGACCGGCC
CGCGTTCGGGGAACTCTACGTGCGCTACGCGCGCATGGTGCATGGGATCCTGCTGGCCAAGGTTCCGCCGAAGGATGCGG
AGGACCTGGTTCAGGACGTCTTCATGGCCGCCATGCGGCAACTGCGCGGGCTGCGAACGGCGGCGGCCTTTCGCGGCTGG
CTGTGCGCGATCGCGCGCAATCGGGCAATGGATTACTACCGGCGGTCGCGGGAGAGCGAGCCGGTGGAAGAGGTGGCGGC
GCCGCGGGGCGCGACCAACGATGCGTTCCTGGTGCTGGATGCGATCCGGCGGCTGCCGGAGGCGTACCGGGAGACGCTGA
TCCTGAGGCTGGTGGAGGGGATGACGGGTCCCGAGATCGCGGATCGCACGGGACTGACTGCGGATTCGGTGCGAGTCAAT
CTCTGCCGGGGAATGAAAATGCTACGCGAGTTGCTGGAGGCGAAATGA

Upstream 100 bases:

>100_bases
GCCGGATGGGGTGGACCGCCTGCATGCGAAGTTCGACATGAAGGCATTCCAGAAATCCGACGTGGAAGCGATGCTGCAGT
AAGCGCGCAGGGTTCCCGGT

Downstream 100 bases:

>100_bases
AAGACGACTACTTGTGGGATCGCTCGGGAGCGCCCGATCCCGAGGTCGAACGGCTGGAGCGGCTGCTGGCTCCGCTGCGC
TACCGGCATCGGGAGCCGCG

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MMQTMAMPADASEDDGLVCAAIAGDRPAFGELYVRYARMVHGILLAKVPPKDAEDLVQDVFMAAMRQLRGLRTAAAFRGW
LCAIARNRAMDYYRRSRESEPVEEVAAPRGATNDAFLVLDAIRRLPEAYRETLILRLVEGMTGPEIADRTGLTADSVRVN
LCRGMKMLRELLEAK

Sequences:

>Translated_175_residues
MMQTMAMPADASEDDGLVCAAIAGDRPAFGELYVRYARMVHGILLAKVPPKDAEDLVQDVFMAAMRQLRGLRTAAAFRGW
LCAIARNRAMDYYRRSRESEPVEEVAAPRGATNDAFLVLDAIRRLPEAYRETLILRLVEGMTGPEIADRTGLTADSVRVN
LCRGMKMLRELLEAK
>Mature_175_residues
MMQTMAMPADASEDDGLVCAAIAGDRPAFGELYVRYARMVHGILLAKVPPKDAEDLVQDVFMAAMRQLRGLRTAAAFRGW
LCAIARNRAMDYYRRSRESEPVEEVAAPRGATNDAFLVLDAIRRLPEAYRETLILRLVEGMTGPEIADRTGLTADSVRVN
LCRGMKMLRELLEAK

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=171, Percent_Identity=32.1637426900585, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19476; Mature: 19476

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
6.3 %Met     (Translated Protein)
8.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
6.3 %Met     (Mature Protein)
8.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMQTMAMPADASEDDGLVCAAIAGDRPAFGELYVRYARMVHGILLAKVPPKDAEDLVQDV
CCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
FMAAMRQLRGLRTAAAFRGWLCAIARNRAMDYYRRSRESEPVEEVAAPRGATNDAFLVLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHH
AIRRLPEAYRETLILRLVEGMTGPEIADRTGLTADSVRVNLCRGMKMLRELLEAK
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMQTMAMPADASEDDGLVCAAIAGDRPAFGELYVRYARMVHGILLAKVPPKDAEDLVQDV
CCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
FMAAMRQLRGLRTAAAFRGWLCAIARNRAMDYYRRSRESEPVEEVAAPRGATNDAFLVLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHH
AIRRLPEAYRETLILRLVEGMTGPEIADRTGLTADSVRVNLCRGMKMLRELLEAK
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]