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The map label for this gene is yagI [H]

Identifier: 116622213

GI number: 116622213

Start: 3934202

End: 3935038

Strand: Direct

Name: yagI [H]

Synonym: Acid_3105

Alternate gene names: 116622213

Gene position: 3934202-3935038 (Clockwise)

Preceding gene: 116622208

Following gene: 116622214

Centisome position: 39.48

GC content: 59.38

Gene sequence:

>837_bases
ATGCCGGCTAACGATTCCGAACCGGATCCCACTTATCACGTGCAGGTGATCGATCGCGTATTTCAGATCCTGGACCTGCT
GGCTCAAAACAAGAGTGAGCTGGGCGCCACCGAACTCGCCCAACGGCTAGAACTTCACAAAAGCACGGTCCACAGACTAT
TGGTGACCCTGGAGAAGCATCGCTTTCTGCAGAAGAACCCCGAGAACGCCAAGTACCGTCTGGGCTGGCGTTTGTTCGAA
CTGGGCACGCTGGCAGTGTCGCGTGTTGACCTTCATAGCATGGCTCGGCCGCACTTGGAGGCTCTCGTCAAGCAGACCGG
AGAGACGGCGCACCTTGGAGTCGTGGCCGGCGGCGAACTGATTTCCATCGCGAGTGTGGAGACCGATCGCAGTCTGCGGC
TGCCGGGGACGGTGGGGCGCAGATCTCCGCTGTACTGTTCTTCACAGGGAAAGTCGATTCTGGCATTCTCAACGGAAGCG
GCGGCCGCCGCGATGATCCGAGGCATCCAGTTCAAAGGCTATACGCGGAATACCATCACCACCGCTGCGCGCCTGATGGT
GGAGTTGGAAAGGGTCCGCAAGTGCGGCTATGCGGTGGACAATGAGGAATTCGAAGATGAACTGCGCTGTATCGGAGCCC
CGGTATTCAATCATGAAGGCCAGGTGATCGCCGCGATGAGTATCGCGGGACCTGCGTACCGGTTGGGAAACCGCGAAATT
CCGCGGTTGGCCGCGGCCGTGGTCCTGACATCGAAAGAGTTGTCGGCTGCCATGGGATATTCCAACCAGCTTCGCGAAGC
AGCCCGCAGCAAGCCGCGTCGTCGTCCCGTATCGTGA

Upstream 100 bases:

>100_bases
AATTTCTACGGCGGCTGAAAGGGCCCTGTTCTACGAGGGTTGGCTGCTTAGACGGCGTCTCACATTGTGAGATGGCTCTG
CTAACTGATATGGTGTAGCG

Downstream 100 bases:

>100_bases
GACGTAATCCCACGAACGGGACCCGAAAGCCCGTGCCAAATAAGGATCTTCGGAAACCGATGCGATTTCTATTGGAGTCC
CGCGGGGGGCGCGGTGTATA

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MPANDSEPDPTYHVQVIDRVFQILDLLAQNKSELGATELAQRLELHKSTVHRLLVTLEKHRFLQKNPENAKYRLGWRLFE
LGTLAVSRVDLHSMARPHLEALVKQTGETAHLGVVAGGELISIASVETDRSLRLPGTVGRRSPLYCSSQGKSILAFSTEA
AAAAMIRGIQFKGYTRNTITTAARLMVELERVRKCGYAVDNEEFEDELRCIGAPVFNHEGQVIAAMSIAGPAYRLGNREI
PRLAAAVVLTSKELSAAMGYSNQLREAARSKPRRRPVS

Sequences:

>Translated_278_residues
MPANDSEPDPTYHVQVIDRVFQILDLLAQNKSELGATELAQRLELHKSTVHRLLVTLEKHRFLQKNPENAKYRLGWRLFE
LGTLAVSRVDLHSMARPHLEALVKQTGETAHLGVVAGGELISIASVETDRSLRLPGTVGRRSPLYCSSQGKSILAFSTEA
AAAAMIRGIQFKGYTRNTITTAARLMVELERVRKCGYAVDNEEFEDELRCIGAPVFNHEGQVIAAMSIAGPAYRLGNREI
PRLAAAVVLTSKELSAAMGYSNQLREAARSKPRRRPVS
>Mature_277_residues
PANDSEPDPTYHVQVIDRVFQILDLLAQNKSELGATELAQRLELHKSTVHRLLVTLEKHRFLQKNPENAKYRLGWRLFEL
GTLAVSRVDLHSMARPHLEALVKQTGETAHLGVVAGGELISIASVETDRSLRLPGTVGRRSPLYCSSQGKSILAFSTEAA
AAAMIRGIQFKGYTRNTITTAARLMVELERVRKCGYAVDNEEFEDELRCIGAPVFNHEGQVIAAMSIAGPAYRLGNREIP
RLAAAVVLTSKELSAAMGYSNQLREAARSKPRRRPVS

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=247, Percent_Identity=36.8421052631579, Blast_Score=176, Evalue=1e-45,
Organism=Escherichia coli, GI1788131, Length=258, Percent_Identity=36.8217054263566, Blast_Score=171, Evalue=4e-44,
Organism=Escherichia coli, GI87082359, Length=260, Percent_Identity=30, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1788581, Length=249, Percent_Identity=31.7269076305221, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1786715, Length=254, Percent_Identity=28.3464566929134, Blast_Score=119, Evalue=1e-28,
Organism=Escherichia coli, GI1789999, Length=250, Percent_Identity=32, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1790752, Length=228, Percent_Identity=28.5087719298246, Blast_Score=97, Evalue=8e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 30711; Mature: 30579

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPANDSEPDPTYHVQVIDRVFQILDLLAQNKSELGATELAQRLELHKSTVHRLLVTLEKH
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RFLQKNPENAKYRLGWRLFELGTLAVSRVDLHSMARPHLEALVKQTGETAHLGVVAGGEL
HHHHCCCCCCEEEECEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCE
ISIASVETDRSLRLPGTVGRRSPLYCSSQGKSILAFSTEAAAAAMIRGIQFKGYTRNTIT
EEEEEECCCCCEECCCCCCCCCCCEECCCCCEEEEECCHHHHHHHHHCCEECCCCCHHHH
TAARLMVELERVRKCGYAVDNEEFEDELRCIGAPVFNHEGQVIAAMSIAGPAYRLGNREI
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEECCCCCEEEEEECCCCHHHCCCCCH
PRLAAAVVLTSKELSAAMGYSNQLREAARSKPRRRPVS
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
PANDSEPDPTYHVQVIDRVFQILDLLAQNKSELGATELAQRLELHKSTVHRLLVTLEKH
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RFLQKNPENAKYRLGWRLFELGTLAVSRVDLHSMARPHLEALVKQTGETAHLGVVAGGEL
HHHHCCCCCCEEEECEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCE
ISIASVETDRSLRLPGTVGRRSPLYCSSQGKSILAFSTEAAAAAMIRGIQFKGYTRNTIT
EEEEEECCCCCEECCCCCCCCCCCEECCCCCEEEEECCHHHHHHHHHCCEECCCCCHHHH
TAARLMVELERVRKCGYAVDNEEFEDELRCIGAPVFNHEGQVIAAMSIAGPAYRLGNREI
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEECCCCCEEEEEECCCCHHHCCCCCH
PRLAAAVVLTSKELSAAMGYSNQLREAARSKPRRRPVS
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]