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The map label for this gene is fadF [H]

Identifier: 116622189

GI number: 116622189

Start: 3897081

End: 3899099

Strand: Reverse

Name: fadF [H]

Synonym: Acid_3081

Alternate gene names: 116622189

Gene position: 3899099-3897081 (Counterclockwise)

Preceding gene: 116622190

Following gene: 116622188

Centisome position: 39.13

GC content: 63.65

Gene sequence:

>2019_bases
GTGGAGGAATCGATCGCCCATTCAAGTTACTGGCTGGTGTCAGGACGAGTTCTCTTTCTCTTTCTGCACCTGCTGGGTTT
GGCCTGCTTTGGGTATATCGTCGCAAAGCGCCTGGCACCGTTATTCCAGGCGCAGCGCGATCCGCGTTGGGATCAGCCGC
TGGCCCGGTTGCGTAAAGTGTTCCGGTACTGGCTGTGCCAGTGGCGACACCCCCGATACAGGGCCGCGGGAATCATCCAC
ATTCTGATCTTCTCCGGGTTCCTGCTCCTGGTGAGCCGTGCCGCCACGACGCTGGCTCTCGGCGTTTCCGATCGCTTTGC
CGCACCGCTGCTAACCGGGCGGGCGGGCCAGATGTACGACATTACTCAGGCATATGCGGCCACGGTAGTGTTTCTATGTG
TCGCGCTCGCCGCTATCCGGCGGATTGTGTTGCGTCCGGTCCGATACCGGCAGCCTGCCGGACAGAGCCGGTGGCGCCCG
ATCGATGCCATCTTGCTGCTGGCTCTCATCGGGATCCTGATGCTGGCAGACGGCCTGCTGGAGGCGACGTCGCACCTACA
CGGCAGCGGCCATCCGGCCCCCGCATTGTCCCTGGCCTGGCTGTTGGAGAAGGGCCTCGCCGCGGCGCCCCTACCGGTGC
TGCATCGCTTGCGTCTGGGCACCTATCTGCTCCACGAGTTCGCCTTCTTTTTCCTGCTGTGTTACCGGCCATTCGGGATC
CAGTTTCATGTGGAGACATCTCTGTTTTCCATTTACTTCGCCAAGTTAGAACGCGGCGTACTCAAACCCGTCCGTTGGGG
CGTTCCGGACGAGGGCCTTGACCAATTGCGGTCATTCGGCGTGAAGCGGTTCGAGGACTTCACCTGGAAGCAGATGCTGG
ACTTCTACTCCTGCGCCGATTGCGGCCGGTGCTCCGACCAGTGCCCTGCGCAGGCGGCAGGACGGGCTCTATCGCCGAGG
CTCCTCACCACCAAAGCCAGGGACTACAGCTTCCGGCATTATCCGGTGCTGGGTAAACCGGAGGCCGGGCCGGCGTTGGT
CGGCGCCGTATTCTCGGAGGACGAAATCTGGTCCTGCACGACGTGCGGCGCCTGCGAGGCGGAATGCCCGCTGCTGGTGG
AATATATCGACAAGGTTGTCGATTTACGCCGCGGACTGGTGGATGAGGGAAGGGCGCCGCAATCGCTGCACAAGCCCCTG
AAGGCGCTGGAGAGCCGCGGCAACCCGTTCGGTAAGCCGGAAAAGAAGCGGGCCGACTGGGCGCAGGGCGCGGCGCCGGT
GTTGAACGGCGCAGGCGGGAAAGACACGCTCTACTTCGCCGACAGCATCACGTCTTACGACGACCGGGCGCAATCAATCG
GGCGGGCGACGGCGCGGGTCCTGGGGAAGCTCGGGATGGACTTCGGGATCCTGGGCGCGAAGGAACGGGACAGCGGCCAC
GATGTGCGGCGTTTCGGCGAGGAGACGTTGTTCCTGGCTCTGCGAGACCACAATAGCGGGGAAATCCGAGCCTCGGGGGT
TCGGCGTATCGTCACCGGCGATCCCCACGCCTACAACGCGCTGAAACACGACTACCGGGACTTGCCTCCAGTGGAGCACA
CCAGCCAGGTGATGGCGGGCGCGGTGCGGACGGGGCAACTTCGGCTGAACCCGGTGAACAACGGCGTGTTTGCGTATCAC
GACCCCTGCTATCTCGGCCGGCACAACGGCATTTATGAGGATCCGCGCGATGTGCTCGATTCCATCCCGGGTTTGCGGCG
GGTGGAAATGAAGCGTTGCCGCGACCGCTCCTTCTGCTGCGGCGGAGGCGGCCTGGCCCTGTTCTACGAGGCCAAGGAGG
AGCAGCGGATGGGGGTCATGCGGGTGCGCATGGCTGCCGAGGCTGGCGCCGGCACCATCGTGACCGCATGCCCCTACTGC
ATGGTCAACATCGAAGACGCCATCAAGGTGGCGGGTTTGGAAGGACAGATGGCGGCGATCGACCTGGCGGAACTGGTGGA
TCGCCAAATGACGAGTTGA

Upstream 100 bases:

>100_bases
GAATGATCTGCGCATTCTACGCCGGTTGATTCTGAATGAGCGTTTGACGCTGGAAAACATTATCGCGTCGATGTAATGGT
CTAAGTCGAGGTATCGAGAA

Downstream 100 bases:

>100_bases
GGAGATACCCAAGATGGAGATCCTGGTTTGCGCGAAGAGAGTGCCGGATACTTCGGAAAACGAGATCCAGCTGGACGCCT
CCGGCGCCGATATCGAACGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 672; Mature: 672

Protein sequence:

>672_residues
MEESIAHSSYWLVSGRVLFLFLHLLGLACFGYIVAKRLAPLFQAQRDPRWDQPLARLRKVFRYWLCQWRHPRYRAAGIIH
ILIFSGFLLLVSRAATTLALGVSDRFAAPLLTGRAGQMYDITQAYAATVVFLCVALAAIRRIVLRPVRYRQPAGQSRWRP
IDAILLLALIGILMLADGLLEATSHLHGSGHPAPALSLAWLLEKGLAAAPLPVLHRLRLGTYLLHEFAFFFLLCYRPFGI
QFHVETSLFSIYFAKLERGVLKPVRWGVPDEGLDQLRSFGVKRFEDFTWKQMLDFYSCADCGRCSDQCPAQAAGRALSPR
LLTTKARDYSFRHYPVLGKPEAGPALVGAVFSEDEIWSCTTCGACEAECPLLVEYIDKVVDLRRGLVDEGRAPQSLHKPL
KALESRGNPFGKPEKKRADWAQGAAPVLNGAGGKDTLYFADSITSYDDRAQSIGRATARVLGKLGMDFGILGAKERDSGH
DVRRFGEETLFLALRDHNSGEIRASGVRRIVTGDPHAYNALKHDYRDLPPVEHTSQVMAGAVRTGQLRLNPVNNGVFAYH
DPCYLGRHNGIYEDPRDVLDSIPGLRRVEMKRCRDRSFCCGGGGLALFYEAKEEQRMGVMRVRMAAEAGAGTIVTACPYC
MVNIEDAIKVAGLEGQMAAIDLAELVDRQMTS

Sequences:

>Translated_672_residues
MEESIAHSSYWLVSGRVLFLFLHLLGLACFGYIVAKRLAPLFQAQRDPRWDQPLARLRKVFRYWLCQWRHPRYRAAGIIH
ILIFSGFLLLVSRAATTLALGVSDRFAAPLLTGRAGQMYDITQAYAATVVFLCVALAAIRRIVLRPVRYRQPAGQSRWRP
IDAILLLALIGILMLADGLLEATSHLHGSGHPAPALSLAWLLEKGLAAAPLPVLHRLRLGTYLLHEFAFFFLLCYRPFGI
QFHVETSLFSIYFAKLERGVLKPVRWGVPDEGLDQLRSFGVKRFEDFTWKQMLDFYSCADCGRCSDQCPAQAAGRALSPR
LLTTKARDYSFRHYPVLGKPEAGPALVGAVFSEDEIWSCTTCGACEAECPLLVEYIDKVVDLRRGLVDEGRAPQSLHKPL
KALESRGNPFGKPEKKRADWAQGAAPVLNGAGGKDTLYFADSITSYDDRAQSIGRATARVLGKLGMDFGILGAKERDSGH
DVRRFGEETLFLALRDHNSGEIRASGVRRIVTGDPHAYNALKHDYRDLPPVEHTSQVMAGAVRTGQLRLNPVNNGVFAYH
DPCYLGRHNGIYEDPRDVLDSIPGLRRVEMKRCRDRSFCCGGGGLALFYEAKEEQRMGVMRVRMAAEAGAGTIVTACPYC
MVNIEDAIKVAGLEGQMAAIDLAELVDRQMTS
>Mature_672_residues
MEESIAHSSYWLVSGRVLFLFLHLLGLACFGYIVAKRLAPLFQAQRDPRWDQPLARLRKVFRYWLCQWRHPRYRAAGIIH
ILIFSGFLLLVSRAATTLALGVSDRFAAPLLTGRAGQMYDITQAYAATVVFLCVALAAIRRIVLRPVRYRQPAGQSRWRP
IDAILLLALIGILMLADGLLEATSHLHGSGHPAPALSLAWLLEKGLAAAPLPVLHRLRLGTYLLHEFAFFFLLCYRPFGI
QFHVETSLFSIYFAKLERGVLKPVRWGVPDEGLDQLRSFGVKRFEDFTWKQMLDFYSCADCGRCSDQCPAQAAGRALSPR
LLTTKARDYSFRHYPVLGKPEAGPALVGAVFSEDEIWSCTTCGACEAECPLLVEYIDKVVDLRRGLVDEGRAPQSLHKPL
KALESRGNPFGKPEKKRADWAQGAAPVLNGAGGKDTLYFADSITSYDDRAQSIGRATARVLGKLGMDFGILGAKERDSGH
DVRRFGEETLFLALRDHNSGEIRASGVRRIVTGDPHAYNALKHDYRDLPPVEHTSQVMAGAVRTGQLRLNPVNNGVFAYH
DPCYLGRHNGIYEDPRDVLDSIPGLRRVEMKRCRDRSFCCGGGGLALFYEAKEEQRMGVMRVRMAAEAGAGTIVTACPYC
MVNIEDAIKVAGLEGQMAAIDLAELVDRQMTS

Specific function: Unknown

COG id: COG0247

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR004017
- InterPro:   IPR012285
- InterPro:   IPR009051 [H]

Pfam domain/function: PF02754 CCG [H]

EC number: NA

Molecular weight: Translated: 74654; Mature: 74654

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEESIAHSSYWLVSGRVLFLFLHLLGLACFGYIVAKRLAPLFQAQRDPRWDQPLARLRKV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
FRYWLCQWRHPRYRAAGIIHILIFSGFLLLVSRAATTLALGVSDRFAAPLLTGRAGQMYD
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHCCCCCCCHH
ITQAYAATVVFLCVALAAIRRIVLRPVRYRQPAGQSRWRPIDAILLLALIGILMLADGLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
EATSHLHGSGHPAPALSLAWLLEKGLAAAPLPVLHRLRLGTYLLHEFAFFFLLCYRPFGI
HHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
QFHVETSLFSIYFAKLERGVLKPVRWGVPDEGLDQLRSFGVKRFEDFTWKQMLDFYSCAD
EEEEHHHHHHHHHHHHHHHHHCHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
CGRCSDQCPAQAAGRALSPRLLTTKARDYSFRHYPVLGKPEAGPALVGAVFSEDEIWSCT
CCCCCCCCCHHHCCCCCCCHHEEECCCCCCCEECCCCCCCCCCCHHHHHHCCCCCCEECC
TCGACEAECPLLVEYIDKVVDLRRGLVDEGRAPQSLHKPLKALESRGNPFGKPEKKRADW
CCCCCCCCCCHHHHHHHHHHHHHHCHHCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHH
AQGAAPVLNGAGGKDTLYFADSITSYDDRAQSIGRATARVLGKLGMDFGILGAKERDSGH
HCCCCHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
DVRRFGEETLFLALRDHNSGEIRASGVRRIVTGDPHAYNALKHDYRDLPPVEHTSQVMAG
HHHHCCCCEEEEEEECCCCCCEECCCCEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHH
AVRTGQLRLNPVNNGVFAYHDPCYLGRHNGIYEDPRDVLDSIPGLRRVEMKRCRDRSFCC
HHEECCEEEEECCCCEEEECCCEEECCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCEEE
GGGGLALFYEAKEEQRMGVMRVRMAAEAGAGTIVTACPYCMVNIEDAIKVAGLEGQMAAI
CCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEECCHHEEEHHHHHHEECCCCCHHHH
DLAELVDRQMTS
HHHHHHHHHCCC
>Mature Secondary Structure
MEESIAHSSYWLVSGRVLFLFLHLLGLACFGYIVAKRLAPLFQAQRDPRWDQPLARLRKV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
FRYWLCQWRHPRYRAAGIIHILIFSGFLLLVSRAATTLALGVSDRFAAPLLTGRAGQMYD
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHCCCCCCCHH
ITQAYAATVVFLCVALAAIRRIVLRPVRYRQPAGQSRWRPIDAILLLALIGILMLADGLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
EATSHLHGSGHPAPALSLAWLLEKGLAAAPLPVLHRLRLGTYLLHEFAFFFLLCYRPFGI
HHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
QFHVETSLFSIYFAKLERGVLKPVRWGVPDEGLDQLRSFGVKRFEDFTWKQMLDFYSCAD
EEEEHHHHHHHHHHHHHHHHHCHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
CGRCSDQCPAQAAGRALSPRLLTTKARDYSFRHYPVLGKPEAGPALVGAVFSEDEIWSCT
CCCCCCCCCHHHCCCCCCCHHEEECCCCCCCEECCCCCCCCCCCHHHHHHCCCCCCEECC
TCGACEAECPLLVEYIDKVVDLRRGLVDEGRAPQSLHKPLKALESRGNPFGKPEKKRADW
CCCCCCCCCCHHHHHHHHHHHHHHCHHCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHH
AQGAAPVLNGAGGKDTLYFADSITSYDDRAQSIGRATARVLGKLGMDFGILGAKERDSGH
HCCCCHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
DVRRFGEETLFLALRDHNSGEIRASGVRRIVTGDPHAYNALKHDYRDLPPVEHTSQVMAG
HHHHCCCCEEEEEEECCCCCCEECCCCEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHH
AVRTGQLRLNPVNNGVFAYHDPCYLGRHNGIYEDPRDVLDSIPGLRRVEMKRCRDRSFCC
HHEECCEEEEECCCCEEEECCCEEECCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCEEE
GGGGLALFYEAKEEQRMGVMRVRMAAEAGAGTIVTACPYCMVNIEDAIKVAGLEGQMAAI
CCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEECCHHEEEHHHHHHEECCCCCHHHH
DLAELVDRQMTS
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]