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The map label for this gene is yebA [H]

Identifier: 116622157

GI number: 116622157

Start: 3848591

End: 3849421

Strand: Reverse

Name: yebA [H]

Synonym: Acid_3049

Alternate gene names: 116622157

Gene position: 3849421-3848591 (Counterclockwise)

Preceding gene: 116622158

Following gene: 116622155

Centisome position: 38.63

GC content: 63.78

Gene sequence:

>831_bases
GTGCGTTGGACATTCATGATGTTTGTGTGCGCCGCCTGGGCGCAGAAGGCCGACGTGCCGCGAACCATTCAACAGGGCAA
CACATTGCGCATCCGTGCCGCGGGCAACGCGGTCTCGGCGCGGATGAACGACCGCACGGTCCGGTTGTTTCCCGGGGATG
GCGGAGCGGTCGGCCTCATGCCCATTGCGGTGGAGCAGAAACCCGGAGAGTACAAAATCGAGTTGCTCGATAAAGATGGC
AAGTCCGTGGGAAGCCTGCCGGTGCGGGTGCTGGATGCGCACTTTCCCAGGCAGAACGTCGTGATCGGGCAGAGCCTCGC
GGAGCTGAAGCCGTCGCCCGGAGAAACCGAGACCACCAACGCATTTCGGAATAACGTCTCGGAGACGCGCTACTGGGCAG
AACCGTTGGAACTGCCGGTGCGCGGTTGCATGACATCACCCTTCGGCGTCCAGCGCTACATGAATGGCAAACCGACCGGA
AATTTCCACGGCGGGCTTGATCAGCGATCGCCCGCCGGCGCACCGGTCCACGCCGTGGCCGGCGGCATCGTGAAGGTAGT
CGCGGAGTGGAACCTGCACGGCCGGACCGTCGGAATCGATCACGGCCAGGGGCTGGAGTCGATGTACCTGCACATGTCGA
AGCTGGCGGTGGCGGAAGGCGCCACGGTCAAGAAAGGAGACGTGGTCGGTTATGTCGGCTCTACCGGACGCTCAACGGCT
CCGCATCTTCACTGGTCGCTCTATGCGAACGGCGTGCCGGTGAATCCGCGCGACTGGGTTCAAGTCACGTCATGCGCGGC
CGCGAAGAAGGCGCCGGCGAAAGGGCGCTGA

Upstream 100 bases:

>100_bases
ACACTCTGTTCGAGGGCGAAGCCGCCGGAGGCAGAAAGAGTGCGCTGCCCGGTCCCGGGCCAAGGCCGGTCACAGAAAGG
CCAACGGGTATCCTGTAAGA

Downstream 100 bases:

>100_bases
GCGGCGGACCTACTTCTTGCGGAGGACCTGGTCCAACAGCAAGTATCGCGAGCGCGCTTCGGGAACCGCGTGGGATTCCA
CGTTCAGGTTCATGATCTGG

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MRWTFMMFVCAAWAQKADVPRTIQQGNTLRIRAAGNAVSARMNDRTVRLFPGDGGAVGLMPIAVEQKPGEYKIELLDKDG
KSVGSLPVRVLDAHFPRQNVVIGQSLAELKPSPGETETTNAFRNNVSETRYWAEPLELPVRGCMTSPFGVQRYMNGKPTG
NFHGGLDQRSPAGAPVHAVAGGIVKVVAEWNLHGRTVGIDHGQGLESMYLHMSKLAVAEGATVKKGDVVGYVGSTGRSTA
PHLHWSLYANGVPVNPRDWVQVTSCAAAKKAPAKGR

Sequences:

>Translated_276_residues
MRWTFMMFVCAAWAQKADVPRTIQQGNTLRIRAAGNAVSARMNDRTVRLFPGDGGAVGLMPIAVEQKPGEYKIELLDKDG
KSVGSLPVRVLDAHFPRQNVVIGQSLAELKPSPGETETTNAFRNNVSETRYWAEPLELPVRGCMTSPFGVQRYMNGKPTG
NFHGGLDQRSPAGAPVHAVAGGIVKVVAEWNLHGRTVGIDHGQGLESMYLHMSKLAVAEGATVKKGDVVGYVGSTGRSTA
PHLHWSLYANGVPVNPRDWVQVTSCAAAKKAPAKGR
>Mature_276_residues
MRWTFMMFVCAAWAQKADVPRTIQQGNTLRIRAAGNAVSARMNDRTVRLFPGDGGAVGLMPIAVEQKPGEYKIELLDKDG
KSVGSLPVRVLDAHFPRQNVVIGQSLAELKPSPGETETTNAFRNNVSETRYWAEPLELPVRGCMTSPFGVQRYMNGKPTG
NFHGGLDQRSPAGAPVHAVAGGIVKVVAEWNLHGRTVGIDHGQGLESMYLHMSKLAVAEGATVKKGDVVGYVGSTGRSTA
PHLHWSLYANGVPVNPRDWVQVTSCAAAKKAPAKGR

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=94, Percent_Identity=41.4893617021277, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 29706; Mature: 29706

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRWTFMMFVCAAWAQKADVPRTIQQGNTLRIRAAGNAVSARMNDRTVRLFPGDGGAVGLM
CCCHHHHHHHHHHHHHCCCCHHHHCCCEEEEEECCCEEEEEECCCEEEEECCCCCEEEEE
PIAVEQKPGEYKIELLDKDGKSVGSLPVRVLDAHFPRQNVVIGQSLAELKPSPGETETTN
EEEEECCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCEEECCHHHHCCCCCCCCCHHH
AFRNNVSETRYWAEPLELPVRGCMTSPFGVQRYMNGKPTGNFHGGLDQRSPAGAPVHAVA
HHHCCCHHHHHHHCCHHCCHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
GGIVKVVAEWNLHGRTVGIDHGQGLESMYLHMSKLAVAEGATVKKGDVVGYVGSTGRSTA
HHHEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCCCC
PHLHWSLYANGVPVNPRDWVQVTSCAAAKKAPAKGR
CEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRWTFMMFVCAAWAQKADVPRTIQQGNTLRIRAAGNAVSARMNDRTVRLFPGDGGAVGLM
CCCHHHHHHHHHHHHHCCCCHHHHCCCEEEEEECCCEEEEEECCCEEEEECCCCCEEEEE
PIAVEQKPGEYKIELLDKDGKSVGSLPVRVLDAHFPRQNVVIGQSLAELKPSPGETETTN
EEEEECCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCEEECCHHHHCCCCCCCCCHHH
AFRNNVSETRYWAEPLELPVRGCMTSPFGVQRYMNGKPTGNFHGGLDQRSPAGAPVHAVA
HHHCCCHHHHHHHCCHHCCHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
GGIVKVVAEWNLHGRTVGIDHGQGLESMYLHMSKLAVAEGATVKKGDVVGYVGSTGRSTA
HHHEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCCCC
PHLHWSLYANGVPVNPRDWVQVTSCAAAKKAPAKGR
CEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]