The gene/protein map for NC_008536 is currently unavailable.
Definition Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome.
Accession NC_008536
Length 9,965,640

Click here to switch to the map view.

The map label for this gene is yhdF [H]

Identifier: 116622120

GI number: 116622120

Start: 3806064

End: 3806954

Strand: Direct

Name: yhdF [H]

Synonym: Acid_3008

Alternate gene names: 116622120

Gene position: 3806064-3806954 (Clockwise)

Preceding gene: 116622119

Following gene: 116622121

Centisome position: 38.19

GC content: 61.62

Gene sequence:

>891_bases
ATGTCTACCCAAACACCAGCCGATCCCAAAGAGAGTTCACAGAAGAAGCCGCCTTTTGACGAGCCCCGGCAGGCGCCGCC
GGCCCGGGAAAAGGAGATGCGCGAGAAGCCGGATCACGGCGAAGAGTCGTACCGCGGTGCGGACCGTCTGGACGGCCGCG
CCGCCCTCATCACCGGTGGCGATAGCGGCATCGGCAAAGCGGTGGCAATTGCCTTCGCGCGCGAAGGCGCGGATGTCGCC
ATCGCCTATTTACCGGAGGAGGAGGAAGATGCACGCGACACCGAGCGCTGGATCCGGCAAGCCGGCCGCAGATGCCTGAC
GCTCCCCGGCGATATCGGGCAGGAGAACCACTGCCGTGAGATCGTGGATCGCGTGAACCGCGAGTTCGGAAGGCTCGACA
TTCTGGTCAACAATGCGGCGTACCAGATGACCCACGAGAAACTGGACGAGTTCGGCAGCGAGGAATGGGACCACACGTTC
CGCACCAACATCTACGCGATGTTCTACCTCGCGAAGGCGGCTTTCCCCCACATGAAACCGGGTAGTACGATCATCAACAC
CTCTTCTGTGCAGGCGTACCAGCCAACGGGTCAGCTTCTCGCCTACGCCACCACCAAGGGCGCCATCGTGACGTTCACAA
AGGCCCTTTCGGAGTTGGCGATTAAAGATAGGATACGGGTGAACGCAGTCGCACCGGGACCCGTCTGGACACCGCTGATT
CCCTCCACGATGCCGGACGAGAAGGTCAAGAAGTTCGGGCAGCAAAGCAAAATGGAACGGCCCGCGCAACCGGCGGAATT
GGCCCCGGCGTACGTCTACCTGGCGAGTCAGGATTCGAGTTACGTGACCGGTTCTGTGATGGACCTGACGGGCGGAAAGA
TGCTGCCCTGA

Upstream 100 bases:

>100_bases
GAAAGGATTTGCGTCAGAAGCCTTACTATCTTTTCCGGATTCCAACCGACGGCAAGCGTATCAGCAGCAGCGCACCACTG
CGCTAGCAAGAGGAGAGTTT

Downstream 100 bases:

>100_bases
CGTCAAGGTGCAGCGCTCAGCTTGAACCCGTCACACGGGCAATGTGGAGAGGCATGATCTGGCCGATCGCACGTTCCGAG
GAATACCGGACAATCCCTCA

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MSTQTPADPKESSQKKPPFDEPRQAPPAREKEMREKPDHGEESYRGADRLDGRAALITGGDSGIGKAVAIAFAREGADVA
IAYLPEEEEDARDTERWIRQAGRRCLTLPGDIGQENHCREIVDRVNREFGRLDILVNNAAYQMTHEKLDEFGSEEWDHTF
RTNIYAMFYLAKAAFPHMKPGSTIINTSSVQAYQPTGQLLAYATTKGAIVTFTKALSELAIKDRIRVNAVAPGPVWTPLI
PSTMPDEKVKKFGQQSKMERPAQPAELAPAYVYLASQDSSYVTGSVMDLTGGKMLP

Sequences:

>Translated_296_residues
MSTQTPADPKESSQKKPPFDEPRQAPPAREKEMREKPDHGEESYRGADRLDGRAALITGGDSGIGKAVAIAFAREGADVA
IAYLPEEEEDARDTERWIRQAGRRCLTLPGDIGQENHCREIVDRVNREFGRLDILVNNAAYQMTHEKLDEFGSEEWDHTF
RTNIYAMFYLAKAAFPHMKPGSTIINTSSVQAYQPTGQLLAYATTKGAIVTFTKALSELAIKDRIRVNAVAPGPVWTPLI
PSTMPDEKVKKFGQQSKMERPAQPAELAPAYVYLASQDSSYVTGSVMDLTGGKMLP
>Mature_295_residues
STQTPADPKESSQKKPPFDEPRQAPPAREKEMREKPDHGEESYRGADRLDGRAALITGGDSGIGKAVAIAFAREGADVAI
AYLPEEEEDARDTERWIRQAGRRCLTLPGDIGQENHCREIVDRVNREFGRLDILVNNAAYQMTHEKLDEFGSEEWDHTFR
TNIYAMFYLAKAAFPHMKPGSTIINTSSVQAYQPTGQLLAYATTKGAIVTFTKALSELAIKDRIRVNAVAPGPVWTPLIP
STMPDEKVKKFGQQSKMERPAQPAELAPAYVYLASQDSSYVTGSVMDLTGGKMLP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI59889578, Length=231, Percent_Identity=31.6017316017316, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI66933014, Length=258, Percent_Identity=32.1705426356589, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI32483357, Length=252, Percent_Identity=29.7619047619048, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI15277342, Length=266, Percent_Identity=28.1954887218045, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI5031737, Length=262, Percent_Identity=30.9160305343511, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI31542939, Length=272, Percent_Identity=27.2058823529412, Blast_Score=93, Evalue=4e-19,
Organism=Homo sapiens, GI40254992, Length=248, Percent_Identity=29.0322580645161, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI10190704, Length=258, Percent_Identity=30.6201550387597, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI19923817, Length=272, Percent_Identity=29.0441176470588, Blast_Score=89, Evalue=7e-18,
Organism=Homo sapiens, GI4758504, Length=259, Percent_Identity=26.6409266409266, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI4504505, Length=251, Percent_Identity=25.0996015936255, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI126723750, Length=255, Percent_Identity=27.4509803921569, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI7705925, Length=254, Percent_Identity=29.1338582677165, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI33667109, Length=204, Percent_Identity=31.8627450980392, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI224922801, Length=185, Percent_Identity=29.1891891891892, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI83715985, Length=260, Percent_Identity=25.7692307692308, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI40254986, Length=193, Percent_Identity=29.0155440414508, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI25282469, Length=267, Percent_Identity=27.3408239700375, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI126723191, Length=189, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI1789378, Length=278, Percent_Identity=47.841726618705, Blast_Score=271, Evalue=4e-74,
Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=35.1020408163265, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1788459, Length=247, Percent_Identity=33.1983805668016, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1789208, Length=249, Percent_Identity=30.9236947791165, Blast_Score=121, Evalue=7e-29,
Organism=Escherichia coli, GI87082100, Length=263, Percent_Identity=34.2205323193916, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI87082160, Length=249, Percent_Identity=32.5301204819277, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI1787905, Length=246, Percent_Identity=29.6747967479675, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=28.1124497991968, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1787335, Length=246, Percent_Identity=29.6747967479675, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI2367365, Length=241, Percent_Identity=29.045643153527, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1787526, Length=252, Percent_Identity=28.5714285714286, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1786812, Length=260, Percent_Identity=25.7692307692308, Blast_Score=80, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17561402, Length=252, Percent_Identity=31.3492063492063, Blast_Score=123, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI25147288, Length=247, Percent_Identity=31.5789473684211, Blast_Score=113, Evalue=9e-26,
Organism=Caenorhabditis elegans, GI193204405, Length=268, Percent_Identity=31.7164179104478, Blast_Score=111, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI17531453, Length=266, Percent_Identity=33.0827067669173, Blast_Score=111, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI17560676, Length=246, Percent_Identity=28.8617886178862, Blast_Score=110, Evalue=9e-25,
Organism=Caenorhabditis elegans, GI71994600, Length=257, Percent_Identity=29.5719844357977, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI71994604, Length=248, Percent_Identity=31.0483870967742, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17544670, Length=266, Percent_Identity=29.3233082706767, Blast_Score=106, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17562906, Length=267, Percent_Identity=30.7116104868914, Blast_Score=105, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17559104, Length=264, Percent_Identity=32.9545454545455, Blast_Score=103, Evalue=9e-23,
Organism=Caenorhabditis elegans, GI17562908, Length=267, Percent_Identity=31.0861423220974, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17536025, Length=257, Percent_Identity=31.9066147859922, Blast_Score=101, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI17560220, Length=268, Percent_Identity=32.4626865671642, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17562904, Length=269, Percent_Identity=29.368029739777, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17560150, Length=262, Percent_Identity=29.0076335877863, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17551412, Length=266, Percent_Identity=29.6992481203008, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17538182, Length=266, Percent_Identity=31.9548872180451, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17555706, Length=255, Percent_Identity=30.9803921568627, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17538480, Length=271, Percent_Identity=29.1512915129151, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17562910, Length=266, Percent_Identity=29.6992481203008, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17562990, Length=264, Percent_Identity=29.1666666666667, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17560332, Length=271, Percent_Identity=28.7822878228782, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI72000259, Length=265, Percent_Identity=28.3018867924528, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17536651, Length=258, Percent_Identity=30.2325581395349, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17563726, Length=260, Percent_Identity=26.9230769230769, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17568967, Length=210, Percent_Identity=25.2380952380952, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI115534694, Length=241, Percent_Identity=26.5560165975104, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17564282, Length=190, Percent_Identity=28.9473684210526, Blast_Score=75, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17565030, Length=266, Percent_Identity=27.4436090225564, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17538486, Length=270, Percent_Identity=26.2962962962963, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI193203117, Length=259, Percent_Identity=25.8687258687259, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17561272, Length=258, Percent_Identity=27.5193798449612, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193203115, Length=256, Percent_Identity=26.171875, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI71982365, Length=240, Percent_Identity=24.5833333333333, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17508651, Length=249, Percent_Identity=24.8995983935743, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=253, Percent_Identity=27.2727272727273, Blast_Score=87, Evalue=4e-18,
Organism=Saccharomyces cerevisiae, GI6322861, Length=252, Percent_Identity=25.7936507936508, Blast_Score=72, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24644339, Length=262, Percent_Identity=33.587786259542, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI23397609, Length=250, Percent_Identity=30.8, Blast_Score=111, Evalue=5e-25,
Organism=Drosophila melanogaster, GI28571526, Length=249, Percent_Identity=32.5301204819277, Blast_Score=108, Evalue=5e-24,
Organism=Drosophila melanogaster, GI21355319, Length=247, Percent_Identity=29.1497975708502, Blast_Score=105, Evalue=3e-23,
Organism=Drosophila melanogaster, GI21357041, Length=250, Percent_Identity=30.4, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24639444, Length=248, Percent_Identity=30.241935483871, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24643142, Length=245, Percent_Identity=30.6122448979592, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24644337, Length=261, Percent_Identity=31.8007662835249, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI17737361, Length=259, Percent_Identity=27.027027027027, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI281364892, Length=193, Percent_Identity=27.979274611399, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI18859837, Length=254, Percent_Identity=24.4094488188976, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI45554248, Length=209, Percent_Identity=25.8373205741627, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24640117, Length=209, Percent_Identity=25.8373205741627, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI21358495, Length=199, Percent_Identity=30.6532663316583, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 32731; Mature: 32600

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MSTQTPADPKESSQKKPPFDEPRQAPPAREKEMREKPDHGEESYRGADRLDGRAALITGG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHCCCHHCCCCEEEEECC
DSGIGKAVAIAFAREGADVAIAYLPEEEEDARDTERWIRQAGRRCLTLPGDIGQENHCRE
CCCCCHHHEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHH
IVDRVNREFGRLDILVNNAAYQMTHEKLDEFGSEEWDHTFRTNIYAMFYLAKAAFPHMKP
HHHHHHHHHCCEEEEECCHHHHHHHHHHHHHCCHHHCHHHHHHHHHHHHHHHHHCCCCCC
GSTIINTSSVQAYQPTGQLLAYATTKGAIVTFTKALSELAIKDRIRVNAVAPGPVWTPLI
CCEEEECCCCEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCC
PSTMPDEKVKKFGQQSKMERPAQPAELAPAYVYLASQDSSYVTGSVMDLTGGKMLP
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEEECEEEECCCCCCCC
>Mature Secondary Structure 
STQTPADPKESSQKKPPFDEPRQAPPAREKEMREKPDHGEESYRGADRLDGRAALITGG
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHCCCHHCCCCEEEEECC
DSGIGKAVAIAFAREGADVAIAYLPEEEEDARDTERWIRQAGRRCLTLPGDIGQENHCRE
CCCCCHHHEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHH
IVDRVNREFGRLDILVNNAAYQMTHEKLDEFGSEEWDHTFRTNIYAMFYLAKAAFPHMKP
HHHHHHHHHCCEEEEECCHHHHHHHHHHHHHCCHHHCHHHHHHHHHHHHHHHHHCCCCCC
GSTIINTSSVQAYQPTGQLLAYATTKGAIVTFTKALSELAIKDRIRVNAVAPGPVWTPLI
CCEEEECCCCEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCC
PSTMPDEKVKKFGQQSKMERPAQPAELAPAYVYLASQDSSYVTGSVMDLTGGKMLP
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEEECEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]