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The map label for this gene is 116622096

Identifier: 116622096

GI number: 116622096

Start: 3768249

End: 3770444

Strand: Direct

Name: 116622096

Synonym: Acid_2983

Alternate gene names: NA

Gene position: 3768249-3770444 (Clockwise)

Preceding gene: 116622095

Following gene: 116622100

Centisome position: 37.81

GC content: 60.25

Gene sequence:

>2196_bases
ATGAAAGCTCGTTTTGTTCTGCTGATCGCCCTGCTGTCGTCCGCCGCCGCATGGGCGGAGCCGCCTGGCCAGAGTTGCAA
CGTACGCGACTTCGGCGCCAGGGGCGACGGTGTCGCGCTCGATACGCAAGCCATCAATCGCGCCATCGAGAAGTGTGGAA
TAGCCGGGGGCGGCACCGTCTACCTGCCCCCCGGCACTTATCTTTCCGGTACGGTTCGCTTGCGCGACAATATCACGCTC
TGGCTGGATTCCGGAGCTACCCTGCGCGGCACGCGCGACCTCTCGCAATACCAGACGGCGGTCGATGGGCAGGCCTGGTA
CCTCGCTCTCGTGCTCGCCAGCGGAGTTCACCACGTTGCCGTCGCGGGCAGGGGCATCATCGATGGCAATAAGGTCCGCA
ACCCTAAGGGCGAGGAGCGGATGCGAGGCCCTCATGCTCTCCTGATCTACAACGTGCGCGATGGTTCCGTGCGCGATGTT
TCCATCCAGGACGCGGGCAACTACGCCTTGATCGTGCGTTCGAGCGAACGGCTGAATATCGATGGCATTACCGTTCGCGG
CGGCTGGGACGGTATCAACATGCACGACACGCGCAACGCGACCATTGCGAATTGCCGCATTTCGTCCGGCGATGACAGCC
TGGCCGGTGCTTACTGGGAAAATGTAACGGTCTCCAATTGCATCCTGAACTCGTCTGCCAACGCAATCCGCGCGGGCGGA
CGCAATGTGTTGTTCAACAATCTCGTGATTTACGGACCCGGCGAGTTCCCCGCCGGCACCTCACAGCGCCATCGGCTGGA
GGCGGGGTTCCAGATTCTGCCGCACCGGGCGTCGTCGCCCAATGGGGGTGAGAATCGCGTTGTGGCGCCAGGGCCGATAG
ACAACATGATGATCTCGAATGTGACGATGGTTAATGTCGGGACGCCCATTTACATCGCCTACAGCAGCGACGCCTCCTAC
AGCGCCAACAATCTTGGTGTTGGCCGCATAACATTTCAAAACGTGACAGCGCGCGGTGCGGGTCTGGTGCCGGTTTACAT
CTCCGCTCCTCCGGAAAACCCGGCTGAGGCGATCGTCCTCAATCATGTCCGGATCACCACGATCGGGGGCGCCACCGAAG
ACGACGTGCAGGGGCAGGGCTTCAGTCCCTTCTCCATTTTGCAGGCCTACGGGATATATGGCAGGAACGTCCGCTCGCTT
GAGCTGAGCGATGTGCGGATCGACTACGCCCGGAAAGATCTGCGGTCCGCGATTTTTGGTGAGAACATCGGAGCCCTCGA
ATTGAATCGCTTCCGGGCGCAACGGGACGCGGACTCTGCGCCAGACATACAGCTTGCCGGCCCGGGCGAGGTCCTGATCG
ATGGTAAGCCTGCGGACTCCACGAATGCGCGTGTAATCGATCTGGATGCCGTAGCGGGAGAGCCTGCCCGCGTGACGGCG
ACGGTCGAGAACTCCGGGAGCGCAGGTTTCGCGAACATCGCAATGGAGATCGGCTCCGAGAACATCTCGCGCAGAGTTTG
GCTTGCCGAGCGGCAACTCGCCAAAGTCTCTTTCCTGAATCTGAGGCCGAAGGCGGGCCGTTCGCTGGTGATTAAAGCAG
GCGGCCACGTCAAAGAGTTGACTATTGCGAATGCGTTAGAGGGGCCCGTCGCTGAGCCGTTCAAGTTTGTGCAGAACACG
CCTTCTGAGGGGCGTCAGTCGGGCACAGGCTTTTATTTGAAGGCTGCCGGCGACTTTCCGTTGCAGCAATATGGCGATCA
GTACGGCGCCATTTATCGCCCGCGGGTGTTGGGCCGCCACGGCTCAGTCATTGTGAAGGTCGGGAATCCCGAGCTTCGGT
CAAACTGGGTAGGGCGCGCCGGCCTGATCGTGCGAAATGACATCGCCAAACCGGGTGAATCGAAGGGCTATGCCATCCTC
GCATGCTCGCCGGCAGCCGGAGTCTCCTTCGAATGGGATTCCGATGGGAACGGAGTCCTGGATGAACATACTAACTTCGA
TGGGTACACGCTTTGGCCGCAGTGGTTAAAACTGGAACGCGATGGCGATCGACTCAGCGGTTTCTCCAGCGCCGACGGCA
AGCAGTGGACAAAGATTGGGGAGACCCATCTTGCCGGCATGGCCGAAATGATGGACGCCGGAATCTTCGCGTACCGGGAC
AGCGCGAAATTCATGGATTTCAAAATCAACGATTGA

Upstream 100 bases:

>100_bases
GAACTAACATGTCGAGTACCGCGACCTTTGGAGTGATCAGCGGGGCAAGTAATTCACGAGCCATGCAGGCAGGGCTGAAA
CTCGTATTCTGAGATAACTC

Downstream 100 bases:

>100_bases
AGATGTGTTTTCGTCTCTGAACAGCAGGTTCGTGTCTGGAACAGGTTGGCTGGACGGCCCCCATCTTTACCATCGCCGTG
AAAGCGAACCGCATCGCCTA

Product: glycoside hydrolase family protein

Products: NA

Alternate protein names: Glycoside Hydrolase Family Protein; Polygalacturonase; Exo-Poly-Alpha-D-Galacturonosidase; Galacturan 1 4-Alpha-Galacturonidase; Alpha-N-Acetylglucosaminidase; Polygalacturonase Family Protein; Glycoside Hydrolase; Pectin Lyase Fold Domain Protein Virulence Factor; Endo-Polygalacturonase; Exopolygalacturonase; Tfp Pilus Assembly -Like Protein; Polygalacturonase Superfamily; Pectate Lyase; Endopolygalacturonase; Polygalacturonase/Beta-Xylosidase

Number of amino acids: Translated: 731; Mature: 731

Protein sequence:

>731_residues
MKARFVLLIALLSSAAAWAEPPGQSCNVRDFGARGDGVALDTQAINRAIEKCGIAGGGTVYLPPGTYLSGTVRLRDNITL
WLDSGATLRGTRDLSQYQTAVDGQAWYLALVLASGVHHVAVAGRGIIDGNKVRNPKGEERMRGPHALLIYNVRDGSVRDV
SIQDAGNYALIVRSSERLNIDGITVRGGWDGINMHDTRNATIANCRISSGDDSLAGAYWENVTVSNCILNSSANAIRAGG
RNVLFNNLVIYGPGEFPAGTSQRHRLEAGFQILPHRASSPNGGENRVVAPGPIDNMMISNVTMVNVGTPIYIAYSSDASY
SANNLGVGRITFQNVTARGAGLVPVYISAPPENPAEAIVLNHVRITTIGGATEDDVQGQGFSPFSILQAYGIYGRNVRSL
ELSDVRIDYARKDLRSAIFGENIGALELNRFRAQRDADSAPDIQLAGPGEVLIDGKPADSTNARVIDLDAVAGEPARVTA
TVENSGSAGFANIAMEIGSENISRRVWLAERQLAKVSFLNLRPKAGRSLVIKAGGHVKELTIANALEGPVAEPFKFVQNT
PSEGRQSGTGFYLKAAGDFPLQQYGDQYGAIYRPRVLGRHGSVIVKVGNPELRSNWVGRAGLIVRNDIAKPGESKGYAIL
ACSPAAGVSFEWDSDGNGVLDEHTNFDGYTLWPQWLKLERDGDRLSGFSSADGKQWTKIGETHLAGMAEMMDAGIFAYRD
SAKFMDFKIND

Sequences:

>Translated_731_residues
MKARFVLLIALLSSAAAWAEPPGQSCNVRDFGARGDGVALDTQAINRAIEKCGIAGGGTVYLPPGTYLSGTVRLRDNITL
WLDSGATLRGTRDLSQYQTAVDGQAWYLALVLASGVHHVAVAGRGIIDGNKVRNPKGEERMRGPHALLIYNVRDGSVRDV
SIQDAGNYALIVRSSERLNIDGITVRGGWDGINMHDTRNATIANCRISSGDDSLAGAYWENVTVSNCILNSSANAIRAGG
RNVLFNNLVIYGPGEFPAGTSQRHRLEAGFQILPHRASSPNGGENRVVAPGPIDNMMISNVTMVNVGTPIYIAYSSDASY
SANNLGVGRITFQNVTARGAGLVPVYISAPPENPAEAIVLNHVRITTIGGATEDDVQGQGFSPFSILQAYGIYGRNVRSL
ELSDVRIDYARKDLRSAIFGENIGALELNRFRAQRDADSAPDIQLAGPGEVLIDGKPADSTNARVIDLDAVAGEPARVTA
TVENSGSAGFANIAMEIGSENISRRVWLAERQLAKVSFLNLRPKAGRSLVIKAGGHVKELTIANALEGPVAEPFKFVQNT
PSEGRQSGTGFYLKAAGDFPLQQYGDQYGAIYRPRVLGRHGSVIVKVGNPELRSNWVGRAGLIVRNDIAKPGESKGYAIL
ACSPAAGVSFEWDSDGNGVLDEHTNFDGYTLWPQWLKLERDGDRLSGFSSADGKQWTKIGETHLAGMAEMMDAGIFAYRD
SAKFMDFKIND
>Mature_731_residues
MKARFVLLIALLSSAAAWAEPPGQSCNVRDFGARGDGVALDTQAINRAIEKCGIAGGGTVYLPPGTYLSGTVRLRDNITL
WLDSGATLRGTRDLSQYQTAVDGQAWYLALVLASGVHHVAVAGRGIIDGNKVRNPKGEERMRGPHALLIYNVRDGSVRDV
SIQDAGNYALIVRSSERLNIDGITVRGGWDGINMHDTRNATIANCRISSGDDSLAGAYWENVTVSNCILNSSANAIRAGG
RNVLFNNLVIYGPGEFPAGTSQRHRLEAGFQILPHRASSPNGGENRVVAPGPIDNMMISNVTMVNVGTPIYIAYSSDASY
SANNLGVGRITFQNVTARGAGLVPVYISAPPENPAEAIVLNHVRITTIGGATEDDVQGQGFSPFSILQAYGIYGRNVRSL
ELSDVRIDYARKDLRSAIFGENIGALELNRFRAQRDADSAPDIQLAGPGEVLIDGKPADSTNARVIDLDAVAGEPARVTA
TVENSGSAGFANIAMEIGSENISRRVWLAERQLAKVSFLNLRPKAGRSLVIKAGGHVKELTIANALEGPVAEPFKFVQNT
PSEGRQSGTGFYLKAAGDFPLQQYGDQYGAIYRPRVLGRHGSVIVKVGNPELRSNWVGRAGLIVRNDIAKPGESKGYAIL
ACSPAAGVSFEWDSDGNGVLDEHTNFDGYTLWPQWLKLERDGDRLSGFSSADGKQWTKIGETHLAGMAEMMDAGIFAYRD
SAKFMDFKIND

Specific function: Unknown

COG id: COG5434

COG function: function code M; Endopolygalacturonase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 78378; Mature: 78378

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKARFVLLIALLSSAAAWAEPPGQSCNVRDFGARGDGVALDTQAINRAIEKCGIAGGGTV
CCCHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCEEEEHHHHHHHHHHCCCCCCCEE
YLPPGTYLSGTVRLRDNITLWLDSGATLRGTRDLSQYQTAVDGQAWYLALVLASGVHHVA
EECCCCEEEEEEEEECCEEEEECCCCEEECCCHHHHHHHHCCCCHHHHHHHHHCCCEEEE
VAGRGIIDGNKVRNPKGEERMRGPHALLIYNVRDGSVRDVSIQDAGNYALIVRSSERLNI
EECCCEECCCCCCCCCCHHHHCCCCEEEEEEECCCCEEEEEEECCCCEEEEEECCCEECC
DGITVRGGWDGINMHDTRNATIANCRISSGDDSLAGAYWENVTVSNCILNSSANAIRAGG
CEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEECCCEEEHEEECCCCCEEECCC
RNVLFNNLVIYGPGEFPAGTSQRHRLEAGFQILPHRASSPNGGENRVVAPGPIDNMMISN
CEEEECCEEEECCCCCCCCCCCCHHHCCCCEEECCCCCCCCCCCCEEECCCCCCCEEECC
VTMVNVGTPIYIAYSSDASYSANNLGVGRITFQNVTARGAGLVPVYISAPPENPAEAIVL
EEEEECCCEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEE
NHVRITTIGGATEDDVQGQGFSPFSILQAYGIYGRNVRSLELSDVRIDYARKDLRSAIFG
EEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEEEEEHHHHHHHHHHHHC
ENIGALELNRFRAQRDADSAPDIQLAGPGEVLIDGKPADSTNARVIDLDAVAGEPARVTA
CCCCEEEHHHHHHHCCCCCCCCEEEECCCCEEECCCCCCCCCCEEEEEECCCCCCEEEEE
TVENSGSAGFANIAMEIGSENISRRVWLAERQLAKVSFLNLRPKAGRSLVIKAGGHVKEL
EEECCCCCCEEEEEEEECCCCCCEEEEHHHHHHHEEEEEECCCCCCCEEEEECCCCEEEE
TIANALEGPVAEPFKFVQNTPSEGRQSGTGFYLKAAGDFPLQQYGDQYGAIYRPRVLGRH
EEHHHCCCCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHCCCCCCEECCEEECCC
GSVIVKVGNPELRSNWVGRAGLIVRNDIAKPGESKGYAILACSPAAGVSFEWDSDGNGVL
CCEEEEECCCHHHCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCC
DEHTNFDGYTLWPQWLKLERDGDRLSGFSSADGKQWTKIGETHLAGMAEMMDAGIFAYRD
CCCCCCCCEEECHHHEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEC
SAKFMDFKIND
CCEEEEEEECC
>Mature Secondary Structure
MKARFVLLIALLSSAAAWAEPPGQSCNVRDFGARGDGVALDTQAINRAIEKCGIAGGGTV
CCCHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCEEEEHHHHHHHHHHCCCCCCCEE
YLPPGTYLSGTVRLRDNITLWLDSGATLRGTRDLSQYQTAVDGQAWYLALVLASGVHHVA
EECCCCEEEEEEEEECCEEEEECCCCEEECCCHHHHHHHHCCCCHHHHHHHHHCCCEEEE
VAGRGIIDGNKVRNPKGEERMRGPHALLIYNVRDGSVRDVSIQDAGNYALIVRSSERLNI
EECCCEECCCCCCCCCCHHHHCCCCEEEEEEECCCCEEEEEEECCCCEEEEEECCCEECC
DGITVRGGWDGINMHDTRNATIANCRISSGDDSLAGAYWENVTVSNCILNSSANAIRAGG
CEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEECCCEEEHEEECCCCCEEECCC
RNVLFNNLVIYGPGEFPAGTSQRHRLEAGFQILPHRASSPNGGENRVVAPGPIDNMMISN
CEEEECCEEEECCCCCCCCCCCCHHHCCCCEEECCCCCCCCCCCCEEECCCCCCCEEECC
VTMVNVGTPIYIAYSSDASYSANNLGVGRITFQNVTARGAGLVPVYISAPPENPAEAIVL
EEEEECCCEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEE
NHVRITTIGGATEDDVQGQGFSPFSILQAYGIYGRNVRSLELSDVRIDYARKDLRSAIFG
EEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEEEEEHHHHHHHHHHHHC
ENIGALELNRFRAQRDADSAPDIQLAGPGEVLIDGKPADSTNARVIDLDAVAGEPARVTA
CCCCEEEHHHHHHHCCCCCCCCEEEECCCCEEECCCCCCCCCCEEEEEECCCCCCEEEEE
TVENSGSAGFANIAMEIGSENISRRVWLAERQLAKVSFLNLRPKAGRSLVIKAGGHVKEL
EEECCCCCCEEEEEEEECCCCCCEEEEHHHHHHHEEEEEECCCCCCCEEEEECCCCEEEE
TIANALEGPVAEPFKFVQNTPSEGRQSGTGFYLKAAGDFPLQQYGDQYGAIYRPRVLGRH
EEHHHCCCCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHCCCCCCEECCEEECCC
GSVIVKVGNPELRSNWVGRAGLIVRNDIAKPGESKGYAILACSPAAGVSFEWDSDGNGVL
CCEEEEECCCHHHCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCC
DEHTNFDGYTLWPQWLKLERDGDRLSGFSSADGKQWTKIGETHLAGMAEMMDAGIFAYRD
CCCCCCCCEEECHHHEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEC
SAKFMDFKIND
CCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA