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The map label for this gene is ogl [H]

Identifier: 116621952

GI number: 116621952

Start: 3590628

End: 3591722

Strand: Reverse

Name: ogl [H]

Synonym: Acid_2837

Alternate gene names: 116621952

Gene position: 3591722-3590628 (Counterclockwise)

Preceding gene: 116621953

Following gene: 116621947

Centisome position: 36.04

GC content: 62.37

Gene sequence:

>1095_bases
ATGATCATGGTCGGCCCCACGCGCAGAGGTTTGCTTCTCTCCGGACTGGCGGCGGCGCGAATCTTCGCCGAAGGGAAAAA
AGCCGAAGCTTTCCCCTCGGACGCGGCGCGCTATGCCGATCCGCTAACCGAACTCGACGTTTACCGGCTGACGAAGCCGG
ACTACTCGACCACGATGACGGCGTACTTCAATCGCGGAATCGCGCGCAACAGCAGCTGGATGCTGTGCTGCTGCGATCGG
ACGGGTGGGCCGCAGGCCTTCCATCTGGACCTGAAGAATGGCGATATGAAGCAGCTGACGGACGTGCAGGACCTAGACGG
CACATCGCTCACGCTGACTCCGGACAACCGCCAGTTCTGCTATCTCGCGGGCCGATCGCTGTACATAGCGATGGTCTCGA
GTTTGAAGGAGCGCGAGTTGTACAAGGTTCCGGAGGGCTGGGAGCCGGGAGGACTGAGCGTGGGTCCGGACGGAACTCAC
GCGACGCTGGTGGAGAAGCGCGGCGAGGCGTCGCGGCTGCGGATGGTGACGCTGGTGCAAGGCGCGTCGCGCACGGTGAC
GGAATCGCCATTCGTGATCAGCGCGCCGATCGCGCGGCCGATGCGCGCGCAGTTCCTGTACAGGCAGGGCGGCGAAGCGG
TGTGGATGGTAAACGCAGACGGAACGCAGAATCGGAAGCTGAAACTGGCCGCCGGTGGTGTCGGGACGCCTAATTGGTCG
AGCGACGGGCGCACGCTGCTGTACCTGAATTTTCCGGAAGACAAGACGCAGGTGAATAATTTGCGCGAATGCACGCCCGA
TACGGGAGCGGATAAGATGATCGGGAAGACTAGCCAGTTCGCGTCGTTCGGCGCGAACCGGGACGCGTCGGTATTTGTGG
GCGCGAGCCGCAATGCGTCGCCGGCGGTACTACTGCTGTTGCGCGCGGCGCACAGTGAGCGGGCGTTGTGCGAGCACAAG
AGCAAGGCGGAGTGGGTGTCGCCGGTGTTTTCACCGGATAGCCAGCGGATTTATTTCCAGAGCGACCGACATGGAAAGCC
GGCGATTTATAGCATGCACGTGGAGAAGCTGGTGGAGAAGACAGACGCGGACTAA

Upstream 100 bases:

>100_bases
ATCGACTGGCGGGATCAATCGGTGAAAACTCCCGCTCCGGCAACATGTGTAATGCACAACGATCGCCATTGTGAACGGAG
TAACCGGGACTGGTACCATC

Downstream 100 bases:

>100_bases
CGCGTATCGGGCGATCGCTCCCTGACGGTGGCGGCTCTGTCAGGGCTCTTCGGCGCGGAAGAGGGTCATCGGAAGACCCT
GCTCCTCGACGACGTACTGA

Product: WD40 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 364

Protein sequence:

>364_residues
MIMVGPTRRGLLLSGLAAARIFAEGKKAEAFPSDAARYADPLTELDVYRLTKPDYSTTMTAYFNRGIARNSSWMLCCCDR
TGGPQAFHLDLKNGDMKQLTDVQDLDGTSLTLTPDNRQFCYLAGRSLYIAMVSSLKERELYKVPEGWEPGGLSVGPDGTH
ATLVEKRGEASRLRMVTLVQGASRTVTESPFVISAPIARPMRAQFLYRQGGEAVWMVNADGTQNRKLKLAAGGVGTPNWS
SDGRTLLYLNFPEDKTQVNNLRECTPDTGADKMIGKTSQFASFGANRDASVFVGASRNASPAVLLLLRAAHSERALCEHK
SKAEWVSPVFSPDSQRIYFQSDRHGKPAIYSMHVEKLVEKTDAD

Sequences:

>Translated_364_residues
MIMVGPTRRGLLLSGLAAARIFAEGKKAEAFPSDAARYADPLTELDVYRLTKPDYSTTMTAYFNRGIARNSSWMLCCCDR
TGGPQAFHLDLKNGDMKQLTDVQDLDGTSLTLTPDNRQFCYLAGRSLYIAMVSSLKERELYKVPEGWEPGGLSVGPDGTH
ATLVEKRGEASRLRMVTLVQGASRTVTESPFVISAPIARPMRAQFLYRQGGEAVWMVNADGTQNRKLKLAAGGVGTPNWS
SDGRTLLYLNFPEDKTQVNNLRECTPDTGADKMIGKTSQFASFGANRDASVFVGASRNASPAVLLLLRAAHSERALCEHK
SKAEWVSPVFSPDSQRIYFQSDRHGKPAIYSMHVEKLVEKTDAD
>Mature_364_residues
MIMVGPTRRGLLLSGLAAARIFAEGKKAEAFPSDAARYADPLTELDVYRLTKPDYSTTMTAYFNRGIARNSSWMLCCCDR
TGGPQAFHLDLKNGDMKQLTDVQDLDGTSLTLTPDNRQFCYLAGRSLYIAMVSSLKERELYKVPEGWEPGGLSVGPDGTH
ATLVEKRGEASRLRMVTLVQGASRTVTESPFVISAPIARPMRAQFLYRQGGEAVWMVNADGTQNRKLKLAAGGVGTPNWS
SDGRTLLYLNFPEDKTQVNNLRECTPDTGADKMIGKTSQFASFGANRDASVFVGASRNASPAVLLLLRAAHSERALCEHK
SKAEWVSPVFSPDSQRIYFQSDRHGKPAIYSMHVEKLVEKTDAD

Specific function: Involved in degradation of pectin, which causes soft-rod disease in plants [H]

COG id: COG0823

COG function: function code U; Periplasmic component of the Tol biopolymer transport system

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011659
- InterPro:   IPR015943 [H]

Pfam domain/function: PF07676 PD40 [H]

EC number: =4.2.2.6 [H]

Molecular weight: Translated: 39984; Mature: 39984

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMVGPTRRGLLLSGLAAARIFAEGKKAEAFPSDAARYADPLTELDVYRLTKPDYSTTMT
CEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCHHHCEEEEECCCCCCHHHH
AYFNRGIARNSSWMLCCCDRTGGPQAFHLDLKNGDMKQLTDVQDLDGTSLTLTPDNRQFC
HHHHCCCCCCCCEEEEEECCCCCCCEEEEECCCCCHHHHCCHHCCCCCEEEECCCCCEEE
YLAGRSLYIAMVSSLKERELYKVPEGWEPGGLSVGPDGTHATLVEKRGEASRLRMVTLVQ
EEECCCHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCEEHHHHCCCCHHHEEEEEEEC
GASRTVTESPFVISAPIARPMRAQFLYRQGGEAVWMVNADGTQNRKLKLAAGGVGTPNWS
CCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCCCCCCEEEEEECCCCCCCCC
SDGRTLLYLNFPEDKTQVNNLRECTPDTGADKMIGKTSQFASFGANRDASVFVGASRNAS
CCCCEEEEEECCCCHHHHHHHHHCCCCCCCHHHHCCCHHHHHCCCCCCCEEEEECCCCCC
PAVLLLLRAAHSERALCEHKSKAEWVSPVFSPDSQRIYFQSDRHGKPAIYSMHVEKLVEK
HHEEEEEHHHCCHHHHHHCCCHHHHHCCCCCCCCCEEEEECCCCCCCEEEHHHHHHHHHH
TDAD
HCCC
>Mature Secondary Structure
MIMVGPTRRGLLLSGLAAARIFAEGKKAEAFPSDAARYADPLTELDVYRLTKPDYSTTMT
CEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCHHHCEEEEECCCCCCHHHH
AYFNRGIARNSSWMLCCCDRTGGPQAFHLDLKNGDMKQLTDVQDLDGTSLTLTPDNRQFC
HHHHCCCCCCCCEEEEEECCCCCCCEEEEECCCCCHHHHCCHHCCCCCEEEECCCCCEEE
YLAGRSLYIAMVSSLKERELYKVPEGWEPGGLSVGPDGTHATLVEKRGEASRLRMVTLVQ
EEECCCHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCEEHHHHCCCCHHHEEEEEEEC
GASRTVTESPFVISAPIARPMRAQFLYRQGGEAVWMVNADGTQNRKLKLAAGGVGTPNWS
CCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCCCCCCEEEEEECCCCCCCCC
SDGRTLLYLNFPEDKTQVNNLRECTPDTGADKMIGKTSQFASFGANRDASVFVGASRNAS
CCCCEEEEEECCCCHHHHHHHHHCCCCCCCHHHHCCCHHHHHCCCCCCCEEEEECCCCCC
PAVLLLLRAAHSERALCEHKSKAEWVSPVFSPDSQRIYFQSDRHGKPAIYSMHVEKLVEK
HHEEEEEHHHCCHHHHHHCCCHHHHHCCCCCCCCCEEEEECCCCCCCEEEHHHHHHHHHH
TDAD
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA