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The map label for this gene is yvbU [H]

Identifier: 116517096

GI number: 116517096

Start: 614421

End: 615389

Strand: Reverse

Name: yvbU [H]

Synonym: SPD_0588

Alternate gene names: 116517096

Gene position: 615389-614421 (Counterclockwise)

Preceding gene: 116516226

Following gene: 116516058

Centisome position: 30.08

GC content: 44.17

Gene sequence:

>969_bases
ATGCTCCTTATTTTCCTATCTTCTTTAGCGATTCTAAGGCAAGTATGGTACAATAAAAACATGAGAATTCAACAATTACA
TTATATTATCAAAATCGTCGAAACTGGCTCCATGAATGAGGCAGCCAAGCAACTCTTTATCACTCAGCCAAGTCTCTCCA
ATGCAGTGCGAGATTTGGAAAATGAAATGGGCATTGAGATCTTTATCCGCAATCCCAAGGGAATCACCTTGACCCGTGAT
GGGATGGAGTTTCTCTCTTATGCCCGTCAGGTTGTCGAGCAGACCCAGCTTCTGGAGGAACGCTATAAAAATCCTGTCGC
CCACCGCGAACTCTTTAGCGTTTCGTCTCAACACTATGCCTTTGTGGTCAATGCCTTTGTCTCTTTGCTCAAGAAAAGCG
ATATGGAGAAATACGAACTCTTCCTTCGTGAAACTCGGACTTGGGAGATTATCGACGACGTCAAGAACTTCCGCAGTGAG
GTCGGGGTCCTCTTCTTAAACAGTTACAACCGTGATGTTTTAACCAAGATGCTGGATGACAATCACCTGCTAGCCCACCA
TCTCTTCACAGCGCAACCGCATATCTTTGTCAGCAAGACCAACCCTCTGGCAAAGAAAGACAAGGTGAAACTGTCTGATT
TGGAGAATTTCCCTTACCTCAGCTATGACCAAGGGACGCACAACTCCTTCTACTTTTCAGAAGAGATTCTTTCTCAAGAA
CACCACAAGAAATCCATTGTGGTCAGTGACCGTGCCACCCTCTTTAATCTCTTGATTGGTTTGGATGGTTATACCATTGC
GACAGGGATTTTGAACAGCAACCTAAACGGAGACAATATCGTTTCTATCCCACTGGATATTGATGACCCGATTGAGCTGG
TCTATATCCAGCATGAGAAAACCAGCCTATCTAAGATGGGCGAACGCTTTATAGACTATCTCCTAGAAGAAGTTCAGTTT
GATAGTTGA

Upstream 100 bases:

>100_bases
TAATACCAAATCGTTTGAGGAATTGCTGCACATCATAGAATGTTTTCATAAGACTCATTCTAGCAAAATTTTGTGTTTTT
TTCAAGAAGAGACTCACACA

Downstream 100 bases:

>100_bases
GAAATGATAAGAACCAATATGTAGGCTAGCAACAACCTGCACATTGGTTCTTTTTACTTATAATTAAAAGTTTCCCCTGC
CAACTTATCAGCTAGCTTAG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MLLIFLSSLAILRQVWYNKNMRIQQLHYIIKIVETGSMNEAAKQLFITQPSLSNAVRDLENEMGIEIFIRNPKGITLTRD
GMEFLSYARQVVEQTQLLEERYKNPVAHRELFSVSSQHYAFVVNAFVSLLKKSDMEKYELFLRETRTWEIIDDVKNFRSE
VGVLFLNSYNRDVLTKMLDDNHLLAHHLFTAQPHIFVSKTNPLAKKDKVKLSDLENFPYLSYDQGTHNSFYFSEEILSQE
HHKKSIVVSDRATLFNLLIGLDGYTIATGILNSNLNGDNIVSIPLDIDDPIELVYIQHEKTSLSKMGERFIDYLLEEVQF
DS

Sequences:

>Translated_322_residues
MLLIFLSSLAILRQVWYNKNMRIQQLHYIIKIVETGSMNEAAKQLFITQPSLSNAVRDLENEMGIEIFIRNPKGITLTRD
GMEFLSYARQVVEQTQLLEERYKNPVAHRELFSVSSQHYAFVVNAFVSLLKKSDMEKYELFLRETRTWEIIDDVKNFRSE
VGVLFLNSYNRDVLTKMLDDNHLLAHHLFTAQPHIFVSKTNPLAKKDKVKLSDLENFPYLSYDQGTHNSFYFSEEILSQE
HHKKSIVVSDRATLFNLLIGLDGYTIATGILNSNLNGDNIVSIPLDIDDPIELVYIQHEKTSLSKMGERFIDYLLEEVQF
DS
>Mature_322_residues
MLLIFLSSLAILRQVWYNKNMRIQQLHYIIKIVETGSMNEAAKQLFITQPSLSNAVRDLENEMGIEIFIRNPKGITLTRD
GMEFLSYARQVVEQTQLLEERYKNPVAHRELFSVSSQHYAFVVNAFVSLLKKSDMEKYELFLRETRTWEIIDDVKNFRSE
VGVLFLNSYNRDVLTKMLDDNHLLAHHLFTAQPHIFVSKTNPLAKKDKVKLSDLENFPYLSYDQGTHNSFYFSEEILSQE
HHKKSIVVSDRATLFNLLIGLDGYTIATGILNSNLNGDNIVSIPLDIDDPIELVYIQHEKTSLSKMGERFIDYLLEEVQF
DS

Specific function: Transcriptional Activator Of The Hca Operon For 3- Phenylpropionic Acid Catabolism. [C]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788887, Length=306, Percent_Identity=24.5098039215686, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787879, Length=293, Percent_Identity=22.8668941979522, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789506, Length=285, Percent_Identity=22.8070175438596, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 37362; Mature: 37362

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLIFLSSLAILRQVWYNKNMRIQQLHYIIKIVETGSMNEAAKQLFITQPSLSNAVRDLE
CEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHEEECCCHHHHHHHHH
NEMGIEIFIRNPKGITLTRDGMEFLSYARQVVEQTQLLEERYKNPVAHRELFSVSSQHYA
HCCCEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHH
FVVNAFVSLLKKSDMEKYELFLRETRTWEIIDDVKNFRSEVGVLFLNSYNRDVLTKMLDD
HHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHCC
NHLLAHHLFTAQPHIFVSKTNPLAKKDKVKLSDLENFPYLSYDQGTHNSFYFSEEILSQE
CCCHHHHHHCCCCEEEEECCCCCCCCCCCCHHCCCCCCCEECCCCCCCCEEEHHHHHHHH
HHKKSIVVSDRATLFNLLIGLDGYTIATGILNSNLNGDNIVSIPLDIDDPIELVYIQHEK
HHCCEEEEEHHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEEEECCH
TSLSKMGERFIDYLLEEVQFDS
HHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLLIFLSSLAILRQVWYNKNMRIQQLHYIIKIVETGSMNEAAKQLFITQPSLSNAVRDLE
CEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHEEECCCHHHHHHHHH
NEMGIEIFIRNPKGITLTRDGMEFLSYARQVVEQTQLLEERYKNPVAHRELFSVSSQHYA
HCCCEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHH
FVVNAFVSLLKKSDMEKYELFLRETRTWEIIDDVKNFRSEVGVLFLNSYNRDVLTKMLDD
HHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHCC
NHLLAHHLFTAQPHIFVSKTNPLAKKDKVKLSDLENFPYLSYDQGTHNSFYFSEEILSQE
CCCHHHHHHCCCCEEEEECCCCCCCCCCCCHHCCCCCCCEECCCCCCCCEEEHHHHHHHH
HHKKSIVVSDRATLFNLLIGLDGYTIATGILNSNLNGDNIVSIPLDIDDPIELVYIQHEK
HHCCEEEEEHHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEEEECCH
TSLSKMGERFIDYLLEEVQFDS
HHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]