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The map label for this gene is dinF [H]

Identifier: 116517012

GI number: 116517012

Start: 1730933

End: 1732303

Strand: Reverse

Name: dinF [H]

Synonym: SPD_1738

Alternate gene names: 116517012

Gene position: 1732303-1730933 (Counterclockwise)

Preceding gene: 116516275

Following gene: 116516777

Centisome position: 84.66

GC content: 41.72

Gene sequence:

>1371_bases
ATGAATAAAAAACGAACAGTGGACCTGATACATGGTCCGATTCTTCCCTCGCTCTTAAGCTTCACCTTTCCAATCTTGCT
ATCAAATATTTTTCAACAGCTCTATAACACTGCTGATGTCTTGATTGTTGGACGATTTCTTGGTCAAGAATCCTTGGCTG
CAGTAGGAGCGACGACAGCGATTTTTGACCTGATTGTAGGCTTTACACTTGGTGTTGGCAATGGCATGGGGATTGTCATT
GCTCGTTATTATGGGGCTCGGAATTTCACTAAAATCAAGGAAGCAGTAGCAGCCACCTGGATTTTAGGTGCTCTTTTGAG
CATTCTAGTTATGTTGCTGGGCTTTCTTGGCTTGTATCCTCTCTTGCAATACTTAGATACTCCTGCAGAAATTCTTCCTC
AATCTTATCAATATATTTCTATGATTGTGACCTGTGTAGGTGTCAGCTTTGCTTATAATCTTTTTGCAGGCTTGTTGCGG
TCTATTGGTGACAGTCTAGCAGCCCTGGGATTTCTGATTTTCTCTGCCTTGGTTAATGTGGTTCTGGATCTCTATTTTAT
TACGCAATTGCATCTGGGAGTTCAATCCGCAGGACTTGCTACCATTATTTCGCAAGGTTTATCAGCGGTTCTCTGCTTTT
ATTATATTCGTAAAAGTGTGCCAGAACTCTTGCCACAGTTTAAACATTTCAAATGGGACAAAAGCTTGTACGCGGATCTC
TTGGAGCAAGGTTTGGCTATGGGCTTGATGAGTTCAATTGTATCTATCGGCAGTGTGATTTTACAGTTTTCTGTTAATAC
ATTTGGTGCAGTGATTATTAGTGCCCAGACGGCAGCTCGACGCATTATGACCTTTGCCCTTCTTCCTATGACCGCTATTT
CTGCATCAATGACGACCTTTGCTTCTCAGAATCTAGGAGCTAAGCGACCTGACCGTATTGTTCAAGGTCTTCGAATCGGC
AGTCGTTTAAGTATATCCTGGGCAGTTTTTGTTTGTATTTTCCTCTTTTTTGCCAGTCCAGCTTTGGTTTCCTTCTTGGC
TAGTTCGACAGATGGTTACTTGATAGAAAATGGAAGTCTCTATCTGCAAATCAGTTCAACCTTTTATCCCATTTTGAGCC
TCTTGTTGATTTATCGCAATTGCTTGCAGGGCTTGGGGCAAAAGATCCTTCCTCTAGTTTCTAGCTTTATTGAACTAATC
GGAAAAATCGTTTTTGTGGTTTTGATTATTCCTTGGGCAGGATATAAGGGTGTTATCCTTTGTGAACCTCTTATCTGGGT
TGCCATGACAGTTCAACTGTACTTCTCATTATTCCGTCATCCCTTGATAAAAGAAGGCAAGGCAATCTTGGCAACCAAAG
TGCAATCCTAG

Upstream 100 bases:

>100_bases
AAACATTGTTAAAAATCGATTTGACTGTCCTTATTTCATTCCGCTATATATAAGTTTGCTGTTTCTTGTCGCTCCTCTGG
AAAGCTGATATAATAGCTTT

Downstream 100 bases:

>100_bases
TTGGATTTACTGAATAAAATCCATTTCCTCTAGTGAAAATCGAAAAAACTTGTGTTCTCGTCTTTAGTTTGGTGTTGAAA
ATAGTTTAACAGACTTTTGA

Product: MATE efflux family protein DinF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 456; Mature: 456

Protein sequence:

>456_residues
MNKKRTVDLIHGPILPSLLSFTFPILLSNIFQQLYNTADVLIVGRFLGQESLAAVGATTAIFDLIVGFTLGVGNGMGIVI
ARYYGARNFTKIKEAVAATWILGALLSILVMLLGFLGLYPLLQYLDTPAEILPQSYQYISMIVTCVGVSFAYNLFAGLLR
SIGDSLAALGFLIFSALVNVVLDLYFITQLHLGVQSAGLATIISQGLSAVLCFYYIRKSVPELLPQFKHFKWDKSLYADL
LEQGLAMGLMSSIVSIGSVILQFSVNTFGAVIISAQTAARRIMTFALLPMTAISASMTTFASQNLGAKRPDRIVQGLRIG
SRLSISWAVFVCIFLFFASPALVSFLASSTDGYLIENGSLYLQISSTFYPILSLLLIYRNCLQGLGQKILPLVSSFIELI
GKIVFVVLIIPWAGYKGVILCEPLIWVAMTVQLYFSLFRHPLIKEGKAILATKVQS

Sequences:

>Translated_456_residues
MNKKRTVDLIHGPILPSLLSFTFPILLSNIFQQLYNTADVLIVGRFLGQESLAAVGATTAIFDLIVGFTLGVGNGMGIVI
ARYYGARNFTKIKEAVAATWILGALLSILVMLLGFLGLYPLLQYLDTPAEILPQSYQYISMIVTCVGVSFAYNLFAGLLR
SIGDSLAALGFLIFSALVNVVLDLYFITQLHLGVQSAGLATIISQGLSAVLCFYYIRKSVPELLPQFKHFKWDKSLYADL
LEQGLAMGLMSSIVSIGSVILQFSVNTFGAVIISAQTAARRIMTFALLPMTAISASMTTFASQNLGAKRPDRIVQGLRIG
SRLSISWAVFVCIFLFFASPALVSFLASSTDGYLIENGSLYLQISSTFYPILSLLLIYRNCLQGLGQKILPLVSSFIELI
GKIVFVVLIIPWAGYKGVILCEPLIWVAMTVQLYFSLFRHPLIKEGKAILATKVQS
>Mature_456_residues
MNKKRTVDLIHGPILPSLLSFTFPILLSNIFQQLYNTADVLIVGRFLGQESLAAVGATTAIFDLIVGFTLGVGNGMGIVI
ARYYGARNFTKIKEAVAATWILGALLSILVMLLGFLGLYPLLQYLDTPAEILPQSYQYISMIVTCVGVSFAYNLFAGLLR
SIGDSLAALGFLIFSALVNVVLDLYFITQLHLGVQSAGLATIISQGLSAVLCFYYIRKSVPELLPQFKHFKWDKSLYADL
LEQGLAMGLMSSIVSIGSVILQFSVNTFGAVIISAQTAARRIMTFALLPMTAISASMTTFASQNLGAKRPDRIVQGLRIG
SRLSISWAVFVCIFLFFASPALVSFLASSTDGYLIENGSLYLQISSTFYPILSLLLIYRNCLQGLGQKILPLVSSFIELI
GKIVFVVLIIPWAGYKGVILCEPLIWVAMTVQLYFSLFRHPLIKEGKAILATKVQS

Specific function: Unknown

COG id: COG0534

COG function: function code V; Na+-driven multidrug efflux pump

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002528
- InterPro:   IPR015522 [H]

Pfam domain/function: PF01554 MatE [H]

EC number: NA

Molecular weight: Translated: 49785; Mature: 49785

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: PS00962 RIBOSOMAL_S2_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]