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The map label for this gene is yajF [C]

Identifier: 116516983

GI number: 116516983

Start: 1939276

End: 1940145

Strand: Reverse

Name: yajF [C]

Synonym: SPD_1970

Alternate gene names: 116516983

Gene position: 1940145-1939276 (Counterclockwise)

Preceding gene: 116516168

Following gene: 116515878

Centisome position: 94.82

GC content: 47.01

Gene sequence:

>870_bases
ATGACCATTGCAACGATTGATATCGGAGGGACTGGGATTAAGTTTGCCAGTCTGACTCCTGATGGGAAAATACTGGATAA
GACAAGTATTTCAACGCCTGAAAACTTGGAGGATTTACTAGCGTGGCTAGATCAACGCTTGTCAGAACAGGATTACAGTG
GGATTGCTATGAGTGTTCCAGGTGCAGTCAATCAAGAGACAGGTGTGATTGATGGCTTCAGTGCGGTGCCCTACATCCAT
GGCTTTTCTTGGTATGAGGCGCTTATCTCTTATCAGCTACCTGTCCATTTAGAAAATGATGCCAACTGCGTTGGACTCAG
TGAACTACTAGCTCATCCAGAGCTTGAAAATGCAGCCTGTGTCGTGATTGGGACAGGGATTGGCGGAGCCATGATTATCA
ATGGTAGACTTCATCGAGGTTGCCACGGTCTGGGTGGAGAATTTGGCTACATGACAACCCTTGCCCCTGCTGAAAAACTT
AATAACTGGTCGCAACTAGCATCAACTGGGAATATGGTACGATACGTGATTGAAAAATCTGGTCATACTGATTGGGACGG
TCGCAAGATTTACCAAGAGGCCGCAGCTGGTAATGCTCTTTGTCAAGAAGCCATTGAGCGCATGAACCGCAATCTGGCGC
AAGGCTTGCTCAATATCCAGTATCTGATCGATCCAGATGTCATCAGTCTGGGTGGCTCTATCAGTCAAAATCCAGATTTT
ATCCAAGGTGTCAAGAAGGCTGTTGAAGACTTTGTCGATGCCTACGAAGAATACACGGTCGCACCAGTTATCCAGGCCTG
CACCTATCACGCAGATGCCAATCTCTACGGTGCTCTTGTCAACTGGCTACAGGAGGAAAAGCAATGGTAA

Upstream 100 bases:

>100_bases
AAAAAGAAGAAATTTAATTTCAAAAAGTAAACATCAAAAGAAAGGAGGGGCGAAAAAGTAAGGACTAACTGCTGATTCGC
CCCTTTTTATGGTAAAAACA

Downstream 100 bases:

>100_bases
GATTTACAGGACTTAGTCCCAAACAAACGCAAGCTATTGAGGTTTTAAAAGGTCATATTTCTCTACCAGATGTGGAAGTG
GCTGTCACTCAGTCTGACCA

Product: ROK family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 288

Protein sequence:

>289_residues
MTIATIDIGGTGIKFASLTPDGKILDKTSISTPENLEDLLAWLDQRLSEQDYSGIAMSVPGAVNQETGVIDGFSAVPYIH
GFSWYEALISYQLPVHLENDANCVGLSELLAHPELENAACVVIGTGIGGAMIINGRLHRGCHGLGGEFGYMTTLAPAEKL
NNWSQLASTGNMVRYVIEKSGHTDWDGRKIYQEAAAGNALCQEAIERMNRNLAQGLLNIQYLIDPDVISLGGSISQNPDF
IQGVKKAVEDFVDAYEEYTVAPVIQACTYHADANLYGALVNWLQEEKQW

Sequences:

>Translated_289_residues
MTIATIDIGGTGIKFASLTPDGKILDKTSISTPENLEDLLAWLDQRLSEQDYSGIAMSVPGAVNQETGVIDGFSAVPYIH
GFSWYEALISYQLPVHLENDANCVGLSELLAHPELENAACVVIGTGIGGAMIINGRLHRGCHGLGGEFGYMTTLAPAEKL
NNWSQLASTGNMVRYVIEKSGHTDWDGRKIYQEAAAGNALCQEAIERMNRNLAQGLLNIQYLIDPDVISLGGSISQNPDF
IQGVKKAVEDFVDAYEEYTVAPVIQACTYHADANLYGALVNWLQEEKQW
>Mature_288_residues
TIATIDIGGTGIKFASLTPDGKILDKTSISTPENLEDLLAWLDQRLSEQDYSGIAMSVPGAVNQETGVIDGFSAVPYIHG
FSWYEALISYQLPVHLENDANCVGLSELLAHPELENAACVVIGTGIGGAMIINGRLHRGCHGLGGEFGYMTTLAPAEKLN
NWSQLASTGNMVRYVIEKSGHTDWDGRKIYQEAAAGNALCQEAIERMNRNLAQGLLNIQYLIDPDVISLGGSISQNPDFI
QGVKKAVEDFVDAYEEYTVAPVIQACTYHADANLYGALVNWLQEEKQW

Specific function: Unknown

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Escherichia coli, GI87081733, Length=307, Percent_Identity=28.6644951140065, Blast_Score=88, Evalue=6e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 31411; Mature: 31280

Theoretical pI: Translated: 4.27; Mature: 4.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIATIDIGGTGIKFASLTPDGKILDKTSISTPENLEDLLAWLDQRLSEQDYSGIAMSVP
CEEEEEEECCCCEEEEEECCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECC
GAVNQETGVIDGFSAVPYIHGFSWYEALISYQLPVHLENDANCVGLSELLAHPELENAAC
CCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHCCCEEECCCCCEECHHHHHCCCCCCCCEE
VVIGTGIGGAMIINGRLHRGCHGLGGEFGYMTTLAPAEKLNNWSQLASTGNMVRYVIEKS
EEEECCCCCEEEECCCHHCCCCCCCCCCCHHHHCCHHHHHCCHHHHHHCCHHEEEEECCC
GHTDWDGRKIYQEAAAGNALCQEAIERMNRNLAQGLLNIQYLIDPDVISLGGSISQNPDF
CCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHCCCCCCCCCHH
IQGVKKAVEDFVDAYEEYTVAPVIQACTYHADANLYGALVNWLQEEKQW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TIATIDIGGTGIKFASLTPDGKILDKTSISTPENLEDLLAWLDQRLSEQDYSGIAMSVP
EEEEEEECCCCEEEEEECCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECC
GAVNQETGVIDGFSAVPYIHGFSWYEALISYQLPVHLENDANCVGLSELLAHPELENAAC
CCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHCCCEEECCCCCEECHHHHHCCCCCCCCEE
VVIGTGIGGAMIINGRLHRGCHGLGGEFGYMTTLAPAEKLNNWSQLASTGNMVRYVIEKS
EEEECCCCCEEEECCCHHCCCCCCCCCCCHHHHCCHHHHHCCHHHHHHCCHHEEEEECCC
GHTDWDGRKIYQEAAAGNALCQEAIERMNRNLAQGLLNIQYLIDPDVISLGGSISQNPDF
CCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHCCCCCCCCCHH
IQGVKKAVEDFVDAYEEYTVAPVIQACTYHADANLYGALVNWLQEEKQW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11792842; 8177218 [H]