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The map label for this gene is ykuT [H]

Identifier: 116516950

GI number: 116516950

Start: 1581958

End: 1582554

Strand: Reverse

Name: ykuT [H]

Synonym: SPD_1562

Alternate gene names: 116516950

Gene position: 1582554-1581958 (Counterclockwise)

Preceding gene: 116515733

Following gene: 116516142

Centisome position: 77.34

GC content: 38.69

Gene sequence:

>597_bases
ATGAAAATATGGTATAATGAAATAAAGGAGTTTTATATGCAAAAATTTATTCAGGCTTATATTGAAAAGCTAGATGTGAC
AACCATTATCGAGAATATTCTAACCAAGGTCATTTCTCTTTTACTGCTTTTGATTGTATTTTATATTGCTAAAAAAATGC
TTCATACCATGGTGCAGAGAATTGTCAAACCTTCTCTAAAAATGTCTCGTCATGATGTCGGACGCCAAAAAACCATCTCA
CGTTTACTAGAAAATGTGTTTAATTATACGCTATATTTCTTTTTACTCTACTGCATTTTGTCGATTTTAGGTTTGCCAGT
TTCTAGTTTGCTGGCTGGAGCTGGTATTGCTGGGGTAGCGATTGGTATGGGAGCCCAAGGCTTTCTGTCTGATGTCATCA
ATGGCTTTTTCATCCTCTTTGAACGTCAACTGGATGTGGGAGATGAGGTCGTTCTGACAAATGGACCGATTACTGTATCG
GGTAAGGTTGTCAGTGTGGGAATTCGTACGACACAGCTTCGTAGCGAGGAGCAAGTCCTTCACTTTGTCCCTAACCGAAA
TATCACAGTTGTTAGCAATTTCTCACGCACAGACTAG

Upstream 100 bases:

>100_bases
TAATCTCCTTTTTGTGTAGTGATTATGATTATAGTATAAATGATAGACAAAATCAAGAATTTTCTGTCTATTTTTTGAAT
ATTTATGGAGAATGAGACTG

Downstream 100 bases:

>100_bases
ACCTGTTATTTTAAGTAATTTGTGGTACAATAGAGGGAGTTTAATAAGGAGAAAAGATGGTTTTAGAAAAGCAGTTGGGC
AATGGTTGTACCTGGATAGA

Product: small conductance mechanosensitive ion channel (MscS) family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MKIWYNEIKEFYMQKFIQAYIEKLDVTTIIENILTKVISLLLLLIVFYIAKKMLHTMVQRIVKPSLKMSRHDVGRQKTIS
RLLENVFNYTLYFFLLYCILSILGLPVSSLLAGAGIAGVAIGMGAQGFLSDVINGFFILFERQLDVGDEVVLTNGPITVS
GKVVSVGIRTTQLRSEEQVLHFVPNRNITVVSNFSRTD

Sequences:

>Translated_198_residues
MKIWYNEIKEFYMQKFIQAYIEKLDVTTIIENILTKVISLLLLLIVFYIAKKMLHTMVQRIVKPSLKMSRHDVGRQKTIS
RLLENVFNYTLYFFLLYCILSILGLPVSSLLAGAGIAGVAIGMGAQGFLSDVINGFFILFERQLDVGDEVVLTNGPITVS
GKVVSVGIRTTQLRSEEQVLHFVPNRNITVVSNFSRTD
>Mature_198_residues
MKIWYNEIKEFYMQKFIQAYIEKLDVTTIIENILTKVISLLLLLIVFYIAKKMLHTMVQRIVKPSLKMSRHDVGRQKTIS
RLLENVFNYTLYFFLLYCILSILGLPVSSLLAGAGIAGVAIGMGAQGFLSDVINGFFILFERQLDVGDEVVLTNGPITVS
GKVVSVGIRTTQLRSEEQVLHFVPNRNITVVSNFSRTD

Specific function: May play a role in resistance to osmotic downshock [H]

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 22395; Mature: 22395

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIWYNEIKEFYMQKFIQAYIEKLDVTTIIENILTKVISLLLLLIVFYIAKKMLHTMVQR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVKPSLKMSRHDVGRQKTISRLLENVFNYTLYFFLLYCILSILGLPVSSLLAGAGIAGVA
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHH
IGMGAQGFLSDVINGFFILFERQLDVGDEVVLTNGPITVSGKVVSVGIRTTQLRSEEQVL
HHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEECCEEEEECCHHHHHCCHHHHH
HFVPNRNITVVSNFSRTD
HHCCCCCEEEEECCCCCC
>Mature Secondary Structure
MKIWYNEIKEFYMQKFIQAYIEKLDVTTIIENILTKVISLLLLLIVFYIAKKMLHTMVQR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVKPSLKMSRHDVGRQKTISRLLENVFNYTLYFFLLYCILSILGLPVSSLLAGAGIAGVA
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHH
IGMGAQGFLSDVINGFFILFERQLDVGDEVVLTNGPITVSGKVVSVGIRTTQLRSEEQVL
HHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEECCEEEEECCHHHHHCCHHHHH
HFVPNRNITVVSNFSRTD
HHCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]