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The map label for this gene is yidA [C]

Identifier: 116516922

GI number: 116516922

Start: 1180047

End: 1180853

Strand: Direct

Name: yidA [C]

Synonym: SPD_1146

Alternate gene names: 116516922

Gene position: 1180047-1180853 (Clockwise)

Preceding gene: 116516095

Following gene: 116516410

Centisome position: 57.67

GC content: 45.11

Gene sequence:

>807_bases
ATGAGTATTAAACTAATCGCCGTCGATATTGACGGAACCCTAGTCAACAGCCAAAAGGAAATCACTCCTGAAGTCTTTTC
TGCCATCCAAGATGCCAAAGAAGCTGGTGTCAAAGTCGTGATTGCAACTGGCCGCCCCATCGCAGGTGTTGCCAAACTTC
TGGACGACTTGCAGTTGAGAGACCAAGGTGACTATGTGGTGACCTTCAATGGTGCCCTTGTCCAAGAAACTGCTACTGGC
CATGAGATTATCAGCGAATCCTTGACCTATGAGGATTATCTGGATATGGAATTCCTCAGTCGCAAGCTCGGTGTCCACAT
GCATGCCATTACCAAGGACGGTATCTATACTGCAAATCGCAATATCGGAAAATACACTGTACACGAATCAACCCTCGTCA
GCATGCCTATCTTCTACCGTACCCCTGAAGAAATGGCTGGCAAGGAAATTGTCAAGTGTATGTTCATCGATGAACCAGAA
ATTCTCGATGCTGCGATTGAAAAAATACCAGCCGAATTTTACGAGCACTACTCTATCAACAAATCTGCTCCTTTCTACCT
CGAACTCCTTAAAAAGAATGTAGACAAGGGTTCAGCTATTACTCACTTGGCTGAAAAACTCGGATTGACCAAAGATGAAA
CCATGGCAATCGGTGACGAAGAAAATGACCGTGCCATGCTGGAAGTCGTTGGAAACCCCGTTGTCATGGAAAATGGAAAT
CCAGAAATCAAAAAAATCGCCAAATACATCACTAAAACAAATGACGAATCCGGCGTTGCCCACGCCATCCGAACATGGGT
ACTGTAA

Upstream 100 bases:

>100_bases
GTTAGACCAAAACAGCATCTTCGCAAGCATCACCCAGCAATTTTTACACTTGATTGAGAACGATCATTTTACCCCAAATA
AAAACTAAAAGAGGAAATTT

Downstream 100 bases:

>100_bases
AAGGAAAGAATAGACTAAAACCGCTCAGCTGAGCGGTTTTTGATGTCTAATTACTGCCCCCTGCAGGAATCGAACCTGCA
ACTACTCCTTAGGAGGGAGT

Product: Cof family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MSIKLIAVDIDGTLVNSQKEITPEVFSAIQDAKEAGVKVVIATGRPIAGVAKLLDDLQLRDQGDYVVTFNGALVQETATG
HEIISESLTYEDYLDMEFLSRKLGVHMHAITKDGIYTANRNIGKYTVHESTLVSMPIFYRTPEEMAGKEIVKCMFIDEPE
ILDAAIEKIPAEFYEHYSINKSAPFYLELLKKNVDKGSAITHLAEKLGLTKDETMAIGDEENDRAMLEVVGNPVVMENGN
PEIKKIAKYITKTNDESGVAHAIRTWVL

Sequences:

>Translated_268_residues
MSIKLIAVDIDGTLVNSQKEITPEVFSAIQDAKEAGVKVVIATGRPIAGVAKLLDDLQLRDQGDYVVTFNGALVQETATG
HEIISESLTYEDYLDMEFLSRKLGVHMHAITKDGIYTANRNIGKYTVHESTLVSMPIFYRTPEEMAGKEIVKCMFIDEPE
ILDAAIEKIPAEFYEHYSINKSAPFYLELLKKNVDKGSAITHLAEKLGLTKDETMAIGDEENDRAMLEVVGNPVVMENGN
PEIKKIAKYITKTNDESGVAHAIRTWVL
>Mature_267_residues
SIKLIAVDIDGTLVNSQKEITPEVFSAIQDAKEAGVKVVIATGRPIAGVAKLLDDLQLRDQGDYVVTFNGALVQETATGH
EIISESLTYEDYLDMEFLSRKLGVHMHAITKDGIYTANRNIGKYTVHESTLVSMPIFYRTPEEMAGKEIVKCMFIDEPEI
LDAAIEKIPAEFYEHYSINKSAPFYLELLKKNVDKGSAITHLAEKLGLTKDETMAIGDEENDRAMLEVVGNPVVMENGNP
EIKKIAKYITKTNDESGVAHAIRTWVL

Specific function: Catalyzes the dephosphorylation of the artificial chromogenic substrate p-nitrophenyl phosphate (pNPP) and of the natural substrates erythrose 4-phosphate and mannose 1-phosphate [H]

COG id: COG0561

COG function: function code R; Predicted hydrolases of the HAD superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily. Cof family [H]

Homologues:

Organism=Escherichia coli, GI2367265, Length=269, Percent_Identity=48.3271375464684, Blast_Score=262, Evalue=2e-71,
Organism=Escherichia coli, GI48994981, Length=284, Percent_Identity=24.6478873239437, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87081741, Length=279, Percent_Identity=24.3727598566308, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI87081790, Length=274, Percent_Identity=27.007299270073, Blast_Score=68, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023214
- InterPro:   IPR013200
- InterPro:   IPR006379
- InterPro:   IPR000150 [H]

Pfam domain/function: PF08282 Hydrolase_3 [H]

EC number: NA

Molecular weight: Translated: 29735; Mature: 29604

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: PS01228 COF_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIKLIAVDIDGTLVNSQKEITPEVFSAIQDAKEAGVKVVIATGRPIAGVAKLLDDLQLR
CCEEEEEEECCCEEECCCHHCCHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHCC
DQGDYVVTFNGALVQETATGHEIISESLTYEDYLDMEFLSRKLGVHMHAITKDGIYTANR
CCCCEEEEECCEEEECCCCHHHHHHHHCCHHHHHCHHHHHHHHCCEEEEEECCCEEECCC
NIGKYTVHESTLVSMPIFYRTPEEMAGKEIVKCMFIDEPEILDAAIEKIPAEFYEHYSIN
CCCEEEEECCEEEECCEEEECHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHCCCC
KSAPFYLELLKKNVDKGSAITHLAEKLGLTKDETMAIGDEENDRAMLEVVGNPVVMENGN
CCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEECCCCEEEECCC
PEIKKIAKYITKTNDESGVAHAIRTWVL
HHHHHHHHHHHCCCCCCHHHHHHHHHCC
>Mature Secondary Structure 
SIKLIAVDIDGTLVNSQKEITPEVFSAIQDAKEAGVKVVIATGRPIAGVAKLLDDLQLR
CEEEEEEECCCEEECCCHHCCHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHCC
DQGDYVVTFNGALVQETATGHEIISESLTYEDYLDMEFLSRKLGVHMHAITKDGIYTANR
CCCCEEEEECCEEEECCCCHHHHHHHHCCHHHHHCHHHHHHHHCCEEEEEECCCEEECCC
NIGKYTVHESTLVSMPIFYRTPEEMAGKEIVKCMFIDEPEILDAAIEKIPAEFYEHYSIN
CCCEEEEECCEEEECCEEEECHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHCCCC
KSAPFYLELLKKNVDKGSAITHLAEKLGLTKDETMAIGDEENDRAMLEVVGNPVVMENGN
CCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEECCCCEEEECCC
PEIKKIAKYITKTNDESGVAHAIRTWVL
HHHHHHHHHHHCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA