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The map label for this gene is licD1 [H]

Identifier: 116516858

GI number: 116516858

Start: 1160391

End: 1161194

Strand: Direct

Name: licD1 [H]

Synonym: SPD_1129

Alternate gene names: 116516858

Gene position: 1160391-1161194 (Clockwise)

Preceding gene: 116516241

Following gene: 116515975

Centisome position: 56.71

GC content: 34.08

Gene sequence:

>804_bases
ATGAAACAACTAACCGTTGAAGATGCCAAACAAATTGAATTAGAAATTTTGGATTATATTGATACTCTCTGTAAAAAGCA
CAATATCAACTATATTATTAACTACGGTACTCTGATTGGGGCGGTTCGACATGAGGGCTTTATCCCTTGGGACGACGATA
TTGATCTGTCCATGCCTAGAGAAGACTACCAACGATTTATTAACATTTTTCAAAAGGAAAAAAGCAAGTATAAGCTCCTA
TCCTTAGAAACTGATAAGAACTACTTTAACAACTTTATCAAGATAACCGACAGTACGACTAAAATTATTGATACTCGAAA
TACAAAAACCTATGAGTCTGGTATCTTTATCGATATTTTCCCTATAGATCGCTTTGATGATCCTAAGGTCATTGATACTT
GTTATAAACTGGAAAGCTTCAAACTGCTGTCTTTCAGTAAACATAAAAATATTGTCTATAAGGATAGCCTTTTAAAAGAT
TGGATACGAACAGCCTTCTGGTTACTCCTTCGACCGGTTTCTCCTCGTTATTTTGCAAATAAAATCGAGAAAGAAATTCA
AAAATATAGTCGTGAAAATGGGCAATATATGGCTTTTATCCCTTCAAAATTTAAGGAAAAGGAAGTCTTCCCAAGTGGTA
CCTTTGATAAAACAATCGATTTACCCTTTGAGAATTTAAGCCTTCCTGCACCTGAAAAATTTGATACTATTTTGACACAA
TTTTATGGAGATTATATGACCCTACCACCAGAAGAAAAACGCTTCTACAGTCATGAATTTCACGCTTATAAATTGGAGGA
TTAG

Upstream 100 bases:

>100_bases
TATTAGTCTACTTGTCTTCACAAAAGATAGCATTTTCTATGAATTTTTAAACCATGTCCTAGCCTTAAAAAATAAATTTA
AAAAATCATAGGAGTTTAAA

Downstream 100 bases:

>100_bases
GATGCAATATTTAGAAAAAAAAGAAATTAAAGAAATTCAACTAGCCCTGCTGGACTATATTGATGAGACTTGTAAGAAAC
ATGATATTCCTTATTTTCTC

Product: phosphotransferase LicD1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MKQLTVEDAKQIELEILDYIDTLCKKHNINYIINYGTLIGAVRHEGFIPWDDDIDLSMPREDYQRFINIFQKEKSKYKLL
SLETDKNYFNNFIKITDSTTKIIDTRNTKTYESGIFIDIFPIDRFDDPKVIDTCYKLESFKLLSFSKHKNIVYKDSLLKD
WIRTAFWLLLRPVSPRYFANKIEKEIQKYSRENGQYMAFIPSKFKEKEVFPSGTFDKTIDLPFENLSLPAPEKFDTILTQ
FYGDYMTLPPEEKRFYSHEFHAYKLED

Sequences:

>Translated_267_residues
MKQLTVEDAKQIELEILDYIDTLCKKHNINYIINYGTLIGAVRHEGFIPWDDDIDLSMPREDYQRFINIFQKEKSKYKLL
SLETDKNYFNNFIKITDSTTKIIDTRNTKTYESGIFIDIFPIDRFDDPKVIDTCYKLESFKLLSFSKHKNIVYKDSLLKD
WIRTAFWLLLRPVSPRYFANKIEKEIQKYSRENGQYMAFIPSKFKEKEVFPSGTFDKTIDLPFENLSLPAPEKFDTILTQ
FYGDYMTLPPEEKRFYSHEFHAYKLED
>Mature_267_residues
MKQLTVEDAKQIELEILDYIDTLCKKHNINYIINYGTLIGAVRHEGFIPWDDDIDLSMPREDYQRFINIFQKEKSKYKLL
SLETDKNYFNNFIKITDSTTKIIDTRNTKTYESGIFIDIFPIDRFDDPKVIDTCYKLESFKLLSFSKHKNIVYKDSLLKD
WIRTAFWLLLRPVSPRYFANKIEKEIQKYSRENGQYMAFIPSKFKEKEVFPSGTFDKTIDLPFENLSLPAPEKFDTILTQ
FYGDYMTLPPEEKRFYSHEFHAYKLED

Specific function: Transfers phosphorylcholine (ChoP) from choline diphosphonucleoside to the lipopolysaccharide (LPS) [H]

COG id: COG3475

COG function: function code M; LPS biosynthesis protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the licD transferase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007074 [H]

Pfam domain/function: PF04991 LicD [H]

EC number: NA

Molecular weight: Translated: 31907; Mature: 31907

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQLTVEDAKQIELEILDYIDTLCKKHNINYIINYGTLIGAVRHEGFIPWDDDIDLSMPR
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCCCCCCCH
EDYQRFINIFQKEKSKYKLLSLETDKNYFNNFIKITDSTTKIIDTRNTKTYESGIFIDIF
HHHHHHHHHHHHCCCCEEEEEEECCHHHHCCEEEEECCCEEEEECCCCCEECCCEEEEEE
PIDRFDDPKVIDTCYKLESFKLLSFSKHKNIVYKDSLLKDWIRTAFWLLLRPVSPRYFAN
ECCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHHHCCCCCHHHHH
KIEKEIQKYSRENGQYMAFIPSKFKEKEVFPSGTFDKTIDLPFENLSLPAPEKFDTILTQ
HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCEECCCHHCCCCCCCHHHHHHHHH
FYGDYMTLPPEEKRFYSHEFHAYKLED
HHCCCCCCCCHHHHHHCCCCEEEEECC
>Mature Secondary Structure
MKQLTVEDAKQIELEILDYIDTLCKKHNINYIINYGTLIGAVRHEGFIPWDDDIDLSMPR
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCCCCCCCH
EDYQRFINIFQKEKSKYKLLSLETDKNYFNNFIKITDSTTKIIDTRNTKTYESGIFIDIF
HHHHHHHHHHHHCCCCEEEEEEECCHHHHCCEEEEECCCEEEEECCCCCEECCCEEEEEE
PIDRFDDPKVIDTCYKLESFKLLSFSKHKNIVYKDSLLKDWIRTAFWLLLRPVSPRYFAN
ECCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHHHCCCCCHHHHH
KIEKEIQKYSRENGQYMAFIPSKFKEKEVFPSGTFDKTIDLPFENLSLPAPEKFDTILTQ
HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCEECCCHHCCCCCCCHHHHHHHHH
FYGDYMTLPPEEKRFYSHEFHAYKLED
HHCCCCCCCCHHHHHHCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2479481; 7542800; 10632893 [H]