Click here to switch to the map view.

The map label for this gene is licT [H]

Identifier: 116516805

GI number: 116516805

Start: 508402

End: 509241

Strand: Direct

Name: licT [H]

Synonym: SPD_0501

Alternate gene names: 116516805

Gene position: 508402-509241 (Clockwise)

Preceding gene: 116516013

Following gene: 116515619

Centisome position: 24.85

GC content: 29.17

Gene sequence:

>840_bases
ATGATCATAAAACGAATACTAAACCACAATGCCGTAATTGCGCAAAGTAAAAAAGATATCGATATTCTTCTTTTTGGAAG
GGGAATAGCTTTTGGAAGAAAAATTGGAGATAAAGTAAATCCAATTGATATTGAGAAAAGTTTTTTTCTCAAAAATAGAG
ATAATATGACCCGTTTTACAGAGATGTTTATTAACGTTCCTTTGGAGTTGGTGTACATCACCGAAAAAATAATTAATCTA
GGTAAAATAACATTAGGTAATAATTTTGATGAGATTATCTATATAAATCTAACGGATCATATTTCTTCGAGTATAGAACG
TTATAAAGAAGGAGTTATTATTTCGAATCCCCTACGCTGGGAAATATCGAAATATTATAAAGAAGAATTTGAGCTTGGGA
AAAGGGCTTTACAAATAATAAAAAAAGAGTTAGGTATTGAACTTCCAATTGACGAAGCTGCATTCATAGCGCTACATTTT
GTTAATGCTAATTTAGAAAATAATTTTCAAGAGTCGTATAAAATCACTGAAATAATTATGGGAATTGAGAAAATCATTCA
AGATTTCTATTGTACTGAGTTTAACCAAGATTCTATTGATTATTATAGATTCATAACTCATATAAAATTATTTGCCCATC
GCTTGGTTGAAAATACAACTTATTGTGACGATGATGATGAAGACTTGTTAGCATTAATGAAAAATAAATATCCTAGAGAA
TATGAATGTGGTGAACAGGTGGCAATGTTTATACAAACTGAGTACAATTATTTGCTGACTTCTAGTGAATTAGTTTATTT
GATGGCTCATATTCGTCGCTTAACAAAAAATTTAGATTAA

Upstream 100 bases:

>100_bases
TTATCACTAATACAAGTGAGCAGGAACCTATTTAATCACATCAGAAGAAGTTTCTTGATGTTTTTTAAGTAGGTTCCTTT
TATTTTAAAAGGGAAATTTT

Downstream 100 bases:

>100_bases
TAGAATAGGAGAATACCATGAGTTATAAAGATAAGGTACAAAAAATCCTCGATGTAATTGGAGGTGAAAAAAATGTCAAT
AGAGTTACCCATTGTGTAAC

Product: transcription antiterminator Lict

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MIIKRILNHNAVIAQSKKDIDILLFGRGIAFGRKIGDKVNPIDIEKSFFLKNRDNMTRFTEMFINVPLELVYITEKIINL
GKITLGNNFDEIIYINLTDHISSSIERYKEGVIISNPLRWEISKYYKEEFELGKRALQIIKKELGIELPIDEAAFIALHF
VNANLENNFQESYKITEIIMGIEKIIQDFYCTEFNQDSIDYYRFITHIKLFAHRLVENTTYCDDDDEDLLALMKNKYPRE
YECGEQVAMFIQTEYNYLLTSSELVYLMAHIRRLTKNLD

Sequences:

>Translated_279_residues
MIIKRILNHNAVIAQSKKDIDILLFGRGIAFGRKIGDKVNPIDIEKSFFLKNRDNMTRFTEMFINVPLELVYITEKIINL
GKITLGNNFDEIIYINLTDHISSSIERYKEGVIISNPLRWEISKYYKEEFELGKRALQIIKKELGIELPIDEAAFIALHF
VNANLENNFQESYKITEIIMGIEKIIQDFYCTEFNQDSIDYYRFITHIKLFAHRLVENTTYCDDDDEDLLALMKNKYPRE
YECGEQVAMFIQTEYNYLLTSSELVYLMAHIRRLTKNLD
>Mature_279_residues
MIIKRILNHNAVIAQSKKDIDILLFGRGIAFGRKIGDKVNPIDIEKSFFLKNRDNMTRFTEMFINVPLELVYITEKIINL
GKITLGNNFDEIIYINLTDHISSSIERYKEGVIISNPLRWEISKYYKEEFELGKRALQIIKKELGIELPIDEAAFIALHF
VNANLENNFQESYKITEIIMGIEKIIQDFYCTEFNQDSIDYYRFITHIKLFAHRLVENTTYCDDDDEDLLALMKNKYPRE
YECGEQVAMFIQTEYNYLLTSSELVYLMAHIRRLTKNLD

Specific function: Mediates positive regulation of the glucanase operon (licST) by functioning as an antiterminator factor of transcription. Prevents termination at terminator lic-t [H]

COG id: COG3711

COG function: function code K; Transcriptional antiterminator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PRD domains [H]

Homologues:

Organism=Escherichia coli, GI1790160, Length=276, Percent_Identity=34.0579710144928, Blast_Score=205, Evalue=2e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004341
- InterPro:   IPR011608
- InterPro:   IPR001550 [H]

Pfam domain/function: PF03123 CAT_RBD; PF00874 PRD [H]

EC number: NA

Molecular weight: Translated: 32871; Mature: 32871

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIKRILNHNAVIAQSKKDIDILLFGRGIAFGRKIGDKVNPIDIEKSFFLKNRDNMTRFT
CHHHHHHCCCCEEECCCCCEEEEEEECCHHHHHHHCCCCCCEECCHHHHCCCCCCHHHHH
EMFINVPLELVYITEKIINLGKITLGNNFDEIIYINLTDHISSSIERYKEGVIISNPLRW
HHHHHCCHHEEHHHHHHHHCCEEEECCCCCCEEEEEEHHHHHHHHHHHHCCCEECCCCHH
EISKYYKEEFELGKRALQIIKKELGIELPIDEAAFIALHFVNANLENNFQESYKITEIIM
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEEEEEEEECCCCCCHHHHHHHHHHHH
GIEKIIQDFYCTEFNQDSIDYYRFITHIKLFAHRLVENTTYCDDDDEDLLALMKNKYPRE
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCC
YECGEQVAMFIQTEYNYLLTSSELVYLMAHIRRLTKNLD
CCCHHHHHHHHEECCCEEEEHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIIKRILNHNAVIAQSKKDIDILLFGRGIAFGRKIGDKVNPIDIEKSFFLKNRDNMTRFT
CHHHHHHCCCCEEECCCCCEEEEEEECCHHHHHHHCCCCCCEECCHHHHCCCCCCHHHHH
EMFINVPLELVYITEKIINLGKITLGNNFDEIIYINLTDHISSSIERYKEGVIISNPLRW
HHHHHCCHHEEHHHHHHHHCCEEEECCCCCCEEEEEEHHHHHHHHHHHHCCCEECCCCHH
EISKYYKEEFELGKRALQIIKKELGIELPIDEAAFIALHFVNANLENNFQESYKITEIIM
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEEEEEEEECCCCCCHHHHHHHHHHHH
GIEKIIQDFYCTEFNQDSIDYYRFITHIKLFAHRLVENTTYCDDDDEDLLALMKNKYPRE
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCC
YECGEQVAMFIQTEYNYLLTSSELVYLMAHIRRLTKNLD
CCCHHHHHHHHEECCCEEEEHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8606172; 8969509; 9384377; 6087283 [H]