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The map label for this gene is ydiF [H]

Identifier: 116516774

GI number: 116516774

Start: 1006899

End: 1008800

Strand: Direct

Name: ydiF [H]

Synonym: SPD_0998

Alternate gene names: 116516774

Gene position: 1006899-1008800 (Clockwise)

Preceding gene: 116516205

Following gene: 116516782

Centisome position: 49.21

GC content: 42.06

Gene sequence:

>1902_bases
ATGATTATTTTACAAGCTAATAAAATTGAACGTTCTTTTGCAGGAGAGGTTCTTTTCGATAATATCAACCTGCAGGTTGA
TGAACGAGATCGGATTGCTCTTGTTGGGAAAAATGGTGCAGGTAAGTCTACTCTTTTGAAGATTTTAGTTGGAGAAGAGG
AGCCAACTAGCGGAGAAATCAATAAGAAAAAAGATATTTCTCTGTCTTACCTAGCCCAAGATAGCCGTTTTGAGTCTGAA
AATACCATCTACGATGAAATGCTTCATGTCTTTAATGATTTGCGTCGGACGGAGAGACAACTGCGTCAGATGGAGCTGGA
GATGGGTGAAAAGTCTGGTGAGGATTTGGATAAACTGATGTCAGATTATGACCGCTTATCTGAGAATTTTCGCCAAGCAG
GTGGCTTTACCTATGAAGCTGATATTCGAGCGATTTTGAATGGATTCAAGTTTGACGAGTCTATGTGGCAGATGAAAATT
GCTGAGCTTTCTGGTGGTCAAAATACTCGTTTGGCACTTGCCAAAATGCTCCTTGAAAAGCCCAATCTCTTGGTCTTGGA
CGAGCCAACTAACCACTTGGATATTGAAACCATCGCCTGGCTAGAGAATTACTTGGTAAACTATAGCGGTGCCCTCATTA
TCGTCAGCCACGACCGTTATTTCTTGGACAAGGTTGCGACAATTACGCTAGATTTGACCAAGCATTCCTTGGATCGCTAT
GTGGGGAATTACTCTCGTTTTGTCGAATTGAAGGAGCAAAAGCTAGTTACTGAGGCAAAAAACTATGAAAAGCAACAGAA
GGAAATCGCTGCTCTGGAAGACTTTGTCAATCGCAATCTAGTTCGTGCTTCAACGACTAAACGTGCTCAATCTCGCCGTA
AACAACTGGAAAAAATGGAACGTTTGGACAAGCCTGAAGCTGGCAAGAAATCAGCCAACATGACCTTCCAGTCTGAAAAA
ACGTCGGGCAATGTTGTTTTGACTGTTGAAAATGCAGCTGTTGGCTATGACGGGGAAGTCTTGTCACAACCGATTAACCT
AGATCTTCGTAAGATGAATGCTGTCGCTATCGTTGGTCCAAATGGTATCGGCAAGTCAACCTTTATCAAGTCTATTGTGG
ACCAGATTCCTTTTATCAAGGGAGAAAAGCGCTTTGGCGCTAATGTTGAGGTTGGTTACTATGACCAAACCCAAAGCAAG
CTGACACCAAGTAATACGGTGCTGGATGAACTCTGGAATGATTTCAAACTGACACCAGAAGTTGAAATCCGCAACCGTCT
TGGAGCCTTCCTTTTCTCAGGAGATGATGTTAAAAAATCAGTCGGCATGCTATCTGGTGGCGAAAAAGCTCGTTTGCTTT
TAGCTAAATTGTCTATGGAAAACAATAATTTTTTGATTCTGGATGAGCCGACCAACCACTTGGATATTGATAGTAAGGAA
GTGCTAGAAAATGCCTTGATTGACTTTGATGGAACCTTGCTGTTTGTCAGTCATGATCGTTACTTTATCAATCGTGTGGC
AACTCATGTTTTGGAATTGTCTGAGAATGGTTCAACTCTCTACCTTGGAGATTACGACTACTATGTTGAGAAGAAAGCAA
CAGCAGAAATGAGTCAGACTGAGGAAGCTTCAACTAGCAATCAAGCAAAGGAAGCAAGTCCAGTCAATGACTATCAGGCC
CAGAAAGAAAGTCAAAAAGAAGTTCGCAAACTCATGCGACAAATCGAAAGTCTAGAAGCTGAAATTGAAGAGCTAGAAAG
TCAAAGCCAAGCCATTTCTGAACAAATGTTGGAAACAAACGATGCCGACAAACTCATGGAATTACAGGCTGAGCTGGACA
AAATCAGCCATCGTCAGGAAGAAGCTATGCTTGAGTGGGAAGAATTATCAGAGCAGGTGTAA

Upstream 100 bases:

>100_bases
ATAAAATATACATAATTTAGTTTATTTTATGTTATAAAAGTTGTACTAAAAGACTTACGATTATCTTGAATGCCTTAGGG
AAACATGCTATACTACTTGT

Downstream 100 bases:

>100_bases
AGATGGAACATCTTGGAAAAGTATTTCGTGAATTTCGAACAAGTGGAAATTATTCTTTAAAGGAAGCAGCAGGCGAATCC
TGCTCTACCTCTCAGTTATC

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 633; Mature: 633

Protein sequence:

>633_residues
MIILQANKIERSFAGEVLFDNINLQVDERDRIALVGKNGAGKSTLLKILVGEEEPTSGEINKKKDISLSYLAQDSRFESE
NTIYDEMLHVFNDLRRTERQLRQMELEMGEKSGEDLDKLMSDYDRLSENFRQAGGFTYEADIRAILNGFKFDESMWQMKI
AELSGGQNTRLALAKMLLEKPNLLVLDEPTNHLDIETIAWLENYLVNYSGALIIVSHDRYFLDKVATITLDLTKHSLDRY
VGNYSRFVELKEQKLVTEAKNYEKQQKEIAALEDFVNRNLVRASTTKRAQSRRKQLEKMERLDKPEAGKKSANMTFQSEK
TSGNVVLTVENAAVGYDGEVLSQPINLDLRKMNAVAIVGPNGIGKSTFIKSIVDQIPFIKGEKRFGANVEVGYYDQTQSK
LTPSNTVLDELWNDFKLTPEVEIRNRLGAFLFSGDDVKKSVGMLSGGEKARLLLAKLSMENNNFLILDEPTNHLDIDSKE
VLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSTLYLGDYDYYVEKKATAEMSQTEEASTSNQAKEASPVNDYQA
QKESQKEVRKLMRQIESLEAEIEELESQSQAISEQMLETNDADKLMELQAELDKISHRQEEAMLEWEELSEQV

Sequences:

>Translated_633_residues
MIILQANKIERSFAGEVLFDNINLQVDERDRIALVGKNGAGKSTLLKILVGEEEPTSGEINKKKDISLSYLAQDSRFESE
NTIYDEMLHVFNDLRRTERQLRQMELEMGEKSGEDLDKLMSDYDRLSENFRQAGGFTYEADIRAILNGFKFDESMWQMKI
AELSGGQNTRLALAKMLLEKPNLLVLDEPTNHLDIETIAWLENYLVNYSGALIIVSHDRYFLDKVATITLDLTKHSLDRY
VGNYSRFVELKEQKLVTEAKNYEKQQKEIAALEDFVNRNLVRASTTKRAQSRRKQLEKMERLDKPEAGKKSANMTFQSEK
TSGNVVLTVENAAVGYDGEVLSQPINLDLRKMNAVAIVGPNGIGKSTFIKSIVDQIPFIKGEKRFGANVEVGYYDQTQSK
LTPSNTVLDELWNDFKLTPEVEIRNRLGAFLFSGDDVKKSVGMLSGGEKARLLLAKLSMENNNFLILDEPTNHLDIDSKE
VLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSTLYLGDYDYYVEKKATAEMSQTEEASTSNQAKEASPVNDYQA
QKESQKEVRKLMRQIESLEAEIEELESQSQAISEQMLETNDADKLMELQAELDKISHRQEEAMLEWEELSEQV
>Mature_633_residues
MIILQANKIERSFAGEVLFDNINLQVDERDRIALVGKNGAGKSTLLKILVGEEEPTSGEINKKKDISLSYLAQDSRFESE
NTIYDEMLHVFNDLRRTERQLRQMELEMGEKSGEDLDKLMSDYDRLSENFRQAGGFTYEADIRAILNGFKFDESMWQMKI
AELSGGQNTRLALAKMLLEKPNLLVLDEPTNHLDIETIAWLENYLVNYSGALIIVSHDRYFLDKVATITLDLTKHSLDRY
VGNYSRFVELKEQKLVTEAKNYEKQQKEIAALEDFVNRNLVRASTTKRAQSRRKQLEKMERLDKPEAGKKSANMTFQSEK
TSGNVVLTVENAAVGYDGEVLSQPINLDLRKMNAVAIVGPNGIGKSTFIKSIVDQIPFIKGEKRFGANVEVGYYDQTQSK
LTPSNTVLDELWNDFKLTPEVEIRNRLGAFLFSGDDVKKSVGMLSGGEKARLLLAKLSMENNNFLILDEPTNHLDIDSKE
VLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSTLYLGDYDYYVEKKATAEMSQTEEASTSNQAKEASPVNDYQA
QKESQKEVRKLMRQIESLEAEIEELESQSQAISEQMLETNDADKLMELQAELDKISHRQEEAMLEWEELSEQV

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=528, Percent_Identity=33.9015151515151, Blast_Score=267, Evalue=2e-71,
Organism=Homo sapiens, GI27881506, Length=535, Percent_Identity=31.9626168224299, Blast_Score=228, Evalue=2e-59,
Organism=Homo sapiens, GI10947137, Length=535, Percent_Identity=31.9626168224299, Blast_Score=227, Evalue=2e-59,
Organism=Homo sapiens, GI10947135, Length=558, Percent_Identity=31.5412186379928, Blast_Score=206, Evalue=4e-53,
Organism=Homo sapiens, GI69354671, Length=558, Percent_Identity=31.5412186379928, Blast_Score=206, Evalue=5e-53,
Organism=Escherichia coli, GI1789751, Length=652, Percent_Identity=30.9815950920245, Blast_Score=305, Evalue=7e-84,
Organism=Escherichia coli, GI2367384, Length=522, Percent_Identity=35.2490421455939, Blast_Score=304, Evalue=1e-83,
Organism=Escherichia coli, GI1787041, Length=535, Percent_Identity=34.2056074766355, Blast_Score=293, Evalue=3e-80,
Organism=Escherichia coli, GI1787182, Length=647, Percent_Identity=31.9938176197836, Blast_Score=276, Evalue=3e-75,
Organism=Escherichia coli, GI1789891, Length=218, Percent_Identity=26.605504587156, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI87081834, Length=228, Percent_Identity=30.2631578947368, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI1788165, Length=199, Percent_Identity=28.643216080402, Blast_Score=72, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17559834, Length=539, Percent_Identity=30.9833024118738, Blast_Score=235, Evalue=5e-62,
Organism=Caenorhabditis elegans, GI17555318, Length=528, Percent_Identity=29.9242424242424, Blast_Score=222, Evalue=4e-58,
Organism=Caenorhabditis elegans, GI17553372, Length=506, Percent_Identity=31.2252964426877, Blast_Score=214, Evalue=1e-55,
Organism=Saccharomyces cerevisiae, GI6320874, Length=530, Percent_Identity=31.8867924528302, Blast_Score=240, Evalue=5e-64,
Organism=Saccharomyces cerevisiae, GI6321121, Length=549, Percent_Identity=31.1475409836066, Blast_Score=238, Evalue=2e-63,
Organism=Saccharomyces cerevisiae, GI6324314, Length=385, Percent_Identity=28.3116883116883, Blast_Score=126, Evalue=1e-29,
Organism=Saccharomyces cerevisiae, GI6323278, Length=389, Percent_Identity=27.5064267352185, Blast_Score=122, Evalue=1e-28,
Organism=Saccharomyces cerevisiae, GI6325030, Length=389, Percent_Identity=27.7634961439589, Blast_Score=117, Evalue=8e-27,
Organism=Drosophila melanogaster, GI24666836, Length=505, Percent_Identity=35.8415841584158, Blast_Score=265, Evalue=5e-71,
Organism=Drosophila melanogaster, GI24642252, Length=552, Percent_Identity=31.5217391304348, Blast_Score=238, Evalue=1e-62,
Organism=Drosophila melanogaster, GI18859989, Length=552, Percent_Identity=31.5217391304348, Blast_Score=238, Evalue=1e-62,
Organism=Drosophila melanogaster, GI24641342, Length=532, Percent_Identity=31.7669172932331, Blast_Score=234, Evalue=2e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 72041; Mature: 72041

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIILQANKIERSFAGEVLFDNINLQVDERDRIALVGKNGAGKSTLLKILVGEEEPTSGEI
CEEEECCHHHHHHCCCEEEECCEEEECCCCCEEEEECCCCCHHHEEEEEECCCCCCCCCC
NKKKDISLSYLAQDSRFESENTIYDEMLHVFNDLRRTERQLRQMELEMGEKSGEDLDKLM
CCCCCCCHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
SDYDRLSENFRQAGGFTYEADIRAILNGFKFDESMWQMKIAELSGGQNTRLALAKMLLEK
HHHHHHHHHHHHHCCCEEEHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCC
PNLLVLDEPTNHLDIETIAWLENYLVNYSGALIIVSHDRYFLDKVATITLDLTKHSLDRY
CCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHEEEEEHHHHHHHHH
VGNYSRFVELKEQKLVTEAKNYEKQQKEIAALEDFVNRNLVRASTTKRAQSRRKQLEKME
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHH
RLDKPEAGKKSANMTFQSEKTSGNVVLTVENAAVGYDGEVLSQPINLDLRKMNAVAIVGP
HCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCHHHHCCCCCCEEEEECEEEEECC
NGIGKSTFIKSIVDQIPFIKGEKRFGANVEVGYYDQTQSKLTPSNTVLDELWNDFKLTPE
CCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCC
VEIRNRLGAFLFSGDDVKKSVGMLSGGEKARLLLAKLSMENNNFLILDEPTNHLDIDSKE
HHHHHHHHHEEECCCHHHHHHCCCCCCCHHEEEEEEEECCCCCEEEEECCCCCCCCCHHH
VLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSTLYLGDYDYYVEKKATAEMSQT
HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEECCCHHEECCHHHHHHHHH
EEASTSNQAKEASPVNDYQAQKESQKEVRKLMRQIESLEAEIEELESQSQAISEQMLETN
HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DADKLMELQAELDKISHRQEEAMLEWEELSEQV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIILQANKIERSFAGEVLFDNINLQVDERDRIALVGKNGAGKSTLLKILVGEEEPTSGEI
CEEEECCHHHHHHCCCEEEECCEEEECCCCCEEEEECCCCCHHHEEEEEECCCCCCCCCC
NKKKDISLSYLAQDSRFESENTIYDEMLHVFNDLRRTERQLRQMELEMGEKSGEDLDKLM
CCCCCCCHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
SDYDRLSENFRQAGGFTYEADIRAILNGFKFDESMWQMKIAELSGGQNTRLALAKMLLEK
HHHHHHHHHHHHHCCCEEEHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCC
PNLLVLDEPTNHLDIETIAWLENYLVNYSGALIIVSHDRYFLDKVATITLDLTKHSLDRY
CCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHEEEEEHHHHHHHHH
VGNYSRFVELKEQKLVTEAKNYEKQQKEIAALEDFVNRNLVRASTTKRAQSRRKQLEKME
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHH
RLDKPEAGKKSANMTFQSEKTSGNVVLTVENAAVGYDGEVLSQPINLDLRKMNAVAIVGP
HCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCHHHHCCCCCCEEEEECEEEEECC
NGIGKSTFIKSIVDQIPFIKGEKRFGANVEVGYYDQTQSKLTPSNTVLDELWNDFKLTPE
CCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCC
VEIRNRLGAFLFSGDDVKKSVGMLSGGEKARLLLAKLSMENNNFLILDEPTNHLDIDSKE
HHHHHHHHHEEECCCHHHHHHCCCCCCCHHEEEEEEEECCCCCEEEEECCCCCCCCCHHH
VLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSTLYLGDYDYYVEKKATAEMSQT
HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEECCCHHEECCHHHHHHHHH
EEASTSNQAKEASPVNDYQAQKESQKEVRKLMRQIESLEAEIEELESQSQAISEQMLETN
HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DADKLMELQAELDKISHRQEEAMLEWEELSEQV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]