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The map label for this gene is nifU [H]

Identifier: 116516679

GI number: 116516679

Start: 775934

End: 776374

Strand: Direct

Name: nifU [H]

Synonym: SPD_0765

Alternate gene names: 116516679

Gene position: 775934-776374 (Clockwise)

Preceding gene: 116516952

Following gene: 116515674

Centisome position: 37.92

GC content: 40.82

Gene sequence:

>441_bases
ATGGCACTTTCTAAACTAGATAGCCTTTATATGGCAGTGGTAGCAGACCATTCGAAAAATCCACATCACCAAGGGAAGTT
AGAAGACGCTGAGCAAATCAGTCTCAACAATCCGACTTGTGGGGATGTCATCAACCTCTCTGTCAAGTTTGATGCAGAGG
ACCGTTTGGAAGATATTGCTTTTCTAAATTCAGGATGCACGATTTCAACTGCTTCTGCTAGTATGATGACAGATGCCGTT
TTAGGAAAAACCAAACAAGAAATTTTAGAACTGGCGACTATTTTTTCTGAAATGGTTCAAGGGCAAAAAGATGAGCGTCA
AGACCAACTTGGAGACGCGGCATTCTTGTCAGGTGTTGCCAAATTCCCTCAAAGAATCAAGTGTGCAACCCTAACTTGGA
ATGCCCTTAAGAAAACAATTGAAAATCAAGAAAAACAGTAA

Upstream 100 bases:

>100_bases
GAAGTCCCAGCAACAGCTCGTGCAAGTTTTTATATCTACAATACCAAGGCAGATTGCGACAAACTAGTCGATGCCCTACA
AAAGACAAAGGAGTTTTTCA

Downstream 100 bases:

>100_bases
GACAAGTTTCTTTTGTCTTATGAATTATTAGAAATGAAGAAAGAAAGGATATTATGGCTGAAGAAAGAGTAGAACCAAAA
CCAATTGACCTTGGTGAATA

Product: SUF system FeS assembly protein, NifU family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 145

Protein sequence:

>146_residues
MALSKLDSLYMAVVADHSKNPHHQGKLEDAEQISLNNPTCGDVINLSVKFDAEDRLEDIAFLNSGCTISTASASMMTDAV
LGKTKQEILELATIFSEMVQGQKDERQDQLGDAAFLSGVAKFPQRIKCATLTWNALKKTIENQEKQ

Sequences:

>Translated_146_residues
MALSKLDSLYMAVVADHSKNPHHQGKLEDAEQISLNNPTCGDVINLSVKFDAEDRLEDIAFLNSGCTISTASASMMTDAV
LGKTKQEILELATIFSEMVQGQKDERQDQLGDAAFLSGVAKFPQRIKCATLTWNALKKTIENQEKQ
>Mature_145_residues
ALSKLDSLYMAVVADHSKNPHHQGKLEDAEQISLNNPTCGDVINLSVKFDAEDRLEDIAFLNSGCTISTASASMMTDAVL
GKTKQEILELATIFSEMVQGQKDERQDQLGDAAFLSGVAKFPQRIKCATLTWNALKKTIENQEKQ

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002871
- InterPro:   IPR011341 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 16045; Mature: 15914

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALSKLDSLYMAVVADHSKNPHHQGKLEDAEQISLNNPTCGDVINLSVKFDAEDRLEDIA
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCEEEEEEEECCHHHHHHHH
FLNSGCTISTASASMMTDAVLGKTKQEILELATIFSEMVQGQKDERQDQLGDAAFLSGVA
HHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
KFPQRIKCATLTWNALKKTIENQEKQ
HHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ALSKLDSLYMAVVADHSKNPHHQGKLEDAEQISLNNPTCGDVINLSVKFDAEDRLEDIA
CHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCEEEEEEEECCHHHHHHHH
FLNSGCTISTASASMMTDAVLGKTKQEILELATIFSEMVQGQKDERQDQLGDAAFLSGVA
HHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
KFPQRIKCATLTWNALKKTIENQEKQ
HHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]