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The map label for this gene is cbpD

Identifier: 116516664

GI number: 116516664

Start: 2006512

End: 2007858

Strand: Reverse

Name: cbpD

Synonym: SPD_2028

Alternate gene names: NA

Gene position: 2007858-2006512 (Counterclockwise)

Preceding gene: 116515580

Following gene: 116516871

Centisome position: 98.13

GC content: 38.98

Gene sequence:

>1347_bases
ATGAAAATTTTACCGTTTATAGCAAGAGGAACAAGTTATTACTTGAAGATGTCAGTTAAAAAGCTTGTTCCTTTTTTAGT
AGTAGGATTGATGCTAGCAGCTGGTGATAGTGTCCATGCCTATTCCAGAGGAAATGGATCGATTGCGCGTGGGGATGATT
ATCCTGCTTATTATAAAAATGGGAGCCAGGAGATTGATCAGTGGCGCATGTATTCTCGTCAGTGTACTTCTTTTGTAGCC
TTTCGTTTGAGTAATGTCAATGGTTTTGAAATTCCGGCAGCTTATGGAAATGCGAATGAATGGGGACATCGTGCTCGTCG
GGAAGGTTATCGTGTAGATAATACACCGACGATTGGTTCCATTACTTGGTCTACTGCAGGAACTTATGGTCATGTTGCCT
GGGTGTCAAATGTAATGGGAGATCAGATTGAGATTGAGGAATATAACTATGGTTATACAGAATCCTATAATAAACGAGTT
ATAAAAGCAAACACGATGACAGGATTTATTCATTTTAAAGATTTGGATAGTGGCAGTGTTGGGAATAGTCAATCCTCAGC
TTCAACAGGCGGAACTCATTATTTTAAGACCAAGTCTGCTATTAAAACTGAACCCCTAGTTAGTGCAACTGTGATTGATT
ACTATTATCCTGGGGAGAAGGTTCATTATGATCAGATACTTGAAAAAGACGGCTATAAGTGGTTGAGTTATACTGCCTAT
AATGGAAGCTATCGTTATGTTCAATTGGAGGCTGTGAATAAAAATCCTCTAGGTAATTCTGTTCTTTCTTCAACAGGAGG
AACTCATTATTTTAAGATCAAGTCTGCTATTAAAACTGAACCCCTAGTTAGTGCAACTGTGATTGATTACTATTATCCTG
GAGAGAAGGTTCATTATGATCAGATACTTGAAAAAGACGGCTATAAGTGGTTGAGTTATACGGCTTATAACGGAAGTCGT
CGCTATATACAGCTAGAGGGAGTGACTTCTTCACAAAATTATCAGAATCAATCAGGAAATATCTCTAGCTATGGATCCAA
TAATAGTTCAACTGTCGGTTGGAAGAAAATAAATGGTAGTTGGTATCATTTCAAATCAAATGGTTCTAAATCAACAGGAT
GGCTGAAAGACGGTTCTAGCTGGTATTATTTGAAATTATCTGGTGAAATGCAGACAGGATGGTTAAAGGAGAATGGCTCG
TGGTATTATCTGGGTAGTTCAGGGGCAATGAAAACAGGCTGGTACCAGGTCTCTGGTGAGTGGTATTATTCTTACTCTTC
AGGCGCCTTAGCTATTAATACGACGGTGGATGGCTACAGAGTAAACAGTGATGGAGAACGAGTATAG

Upstream 100 bases:

>100_bases
TATCTTGACTAAAGTGAGAAATTTTCTCACTTTTTCTTTTTTCTCCGAATAATTTAGGTGAAGGCAATCATCGCTTTATA
TTATTTTTTAAGGAGGAAGA

Downstream 100 bases:

>100_bases
AAAATTGGAGTAGGAGAAATTTCCTGCTCTTTTCTGTAAGCAGTTTCCTTGACATTTTTCTTATTTTGCGCTATCATATA
TACATATAATATATGGGAGT

Product: choline binding protein D

Products: NA

Alternate protein names: Surface Protein PspA; Pneumococcal Surface Protein A; Collagenolytic Protease; Cell Wall Hydrolase/Autolysin; Glycoside Hydrolase Family Protein; Muramidase; Amidase; Glycoside Hydrolase Family; Surface Protein A; Glycosyl Hydrolase Family; CHAP Domain Containing Protein; Lytic Transglycosylase Catalytic; M6 Family Metalloprotease Domain-Containing Protein; SCP-Like Extracellular; Endo-Beta-N-Acetylglucosaminidase; Conserved Repeat Protein; Surface Protective Antigen SpaB; Calcineurin-Like Phosphoesterase; Surface Antigen; Protective Antigen SpaA-Like Protein; Glycoside Hydrolase Family 3 Protein; Surface Antigen-Related Protein; Dipeptidase; Dipeptidase B; ErfK/YbiS/YcfS/YnhG Family Protein; Subtilase Family Protease; Autolysin; N-Acetylmuramoyl-L-Alanine Amidase; CHAP Domain-Containing Protein; Cell Wall Surface Anchor Protein; Cell Wall/Surface Repeat-Containing Protein; SH3 Type 3 Domain-Containing Protein; Cna B Domain Protein

Number of amino acids: Translated: 448; Mature: 448

Protein sequence:

>448_residues
MKILPFIARGTSYYLKMSVKKLVPFLVVGLMLAAGDSVHAYSRGNGSIARGDDYPAYYKNGSQEIDQWRMYSRQCTSFVA
FRLSNVNGFEIPAAYGNANEWGHRARREGYRVDNTPTIGSITWSTAGTYGHVAWVSNVMGDQIEIEEYNYGYTESYNKRV
IKANTMTGFIHFKDLDSGSVGNSQSSASTGGTHYFKTKSAIKTEPLVSATVIDYYYPGEKVHYDQILEKDGYKWLSYTAY
NGSYRYVQLEAVNKNPLGNSVLSSTGGTHYFKIKSAIKTEPLVSATVIDYYYPGEKVHYDQILEKDGYKWLSYTAYNGSR
RYIQLEGVTSSQNYQNQSGNISSYGSNNSSTVGWKKINGSWYHFKSNGSKSTGWLKDGSSWYYLKLSGEMQTGWLKENGS
WYYLGSSGAMKTGWYQVSGEWYYSYSSGALAINTTVDGYRVNSDGERV

Sequences:

>Translated_448_residues
MKILPFIARGTSYYLKMSVKKLVPFLVVGLMLAAGDSVHAYSRGNGSIARGDDYPAYYKNGSQEIDQWRMYSRQCTSFVA
FRLSNVNGFEIPAAYGNANEWGHRARREGYRVDNTPTIGSITWSTAGTYGHVAWVSNVMGDQIEIEEYNYGYTESYNKRV
IKANTMTGFIHFKDLDSGSVGNSQSSASTGGTHYFKTKSAIKTEPLVSATVIDYYYPGEKVHYDQILEKDGYKWLSYTAY
NGSYRYVQLEAVNKNPLGNSVLSSTGGTHYFKIKSAIKTEPLVSATVIDYYYPGEKVHYDQILEKDGYKWLSYTAYNGSR
RYIQLEGVTSSQNYQNQSGNISSYGSNNSSTVGWKKINGSWYHFKSNGSKSTGWLKDGSSWYYLKLSGEMQTGWLKENGS
WYYLGSSGAMKTGWYQVSGEWYYSYSSGALAINTTVDGYRVNSDGERV
>Mature_448_residues
MKILPFIARGTSYYLKMSVKKLVPFLVVGLMLAAGDSVHAYSRGNGSIARGDDYPAYYKNGSQEIDQWRMYSRQCTSFVA
FRLSNVNGFEIPAAYGNANEWGHRARREGYRVDNTPTIGSITWSTAGTYGHVAWVSNVMGDQIEIEEYNYGYTESYNKRV
IKANTMTGFIHFKDLDSGSVGNSQSSASTGGTHYFKTKSAIKTEPLVSATVIDYYYPGEKVHYDQILEKDGYKWLSYTAY
NGSYRYVQLEAVNKNPLGNSVLSSTGGTHYFKIKSAIKTEPLVSATVIDYYYPGEKVHYDQILEKDGYKWLSYTAYNGSR
RYIQLEGVTSSQNYQNQSGNISSYGSNNSSTVGWKKINGSWYHFKSNGSKSTGWLKDGSSWYYLKLSGEMQTGWLKENGS
WYYLGSSGAMKTGWYQVSGEWYYSYSSGALAINTTVDGYRVNSDGERV

Specific function: Unknown

COG id: COG3942

COG function: function code R; Surface antigen

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50370; Mature: 50370

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: PS50911 CHAP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILPFIARGTSYYLKMSVKKLVPFLVVGLMLAAGDSVHAYSRGNGSIARGDDYPAYYKN
CCCCCEEECCCEEEEEEEHHHHHHHHHHHHHHHCCCCEEEEECCCCCEECCCCCCHHHCC
GSQEIDQWRMYSRQCTSFVAFRLSNVNGFEIPAAYGNANEWGHRARREGYRVDNTPTIGS
CCHHHHHHHHHHHHHHHEEEEEECCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCE
ITWSTAGTYGHVAWVSNVMGDQIEIEEYNYGYTESYNKRVIKANTMTGFIHFKDLDSGSV
EEECCCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECEEEEEEEEECCCCCC
GNSQSSASTGGTHYFKTKSAIKTEPLVSATVIDYYYPGEKVHYDQILEKDGYKWLSYTAY
CCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEECCCCEEEHHHHHHCCCCEEEEEEEE
NGSYRYVQLEAVNKNPLGNSVLSSTGGTHYFKIKSAIKTEPLVSATVIDYYYPGEKVHYD
CCCEEEEEEEEECCCCCCCHHHHCCCCEEEEEEECCCCCCCCEEEEEEEEECCCCEEEHH
QILEKDGYKWLSYTAYNGSRRYIQLEGVTSSQNYQNQSGNISSYGSNNSSTVGWKKINGS
HHHHCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCC
WYHFKSNGSKSTGWLKDGSSWYYLKLSGEMQTGWLKENGSWYYLGSSGAMKTGWYQVSGE
EEEEECCCCCCCCEEECCCCEEEEEECCCCEECEEEECCCEEEEECCCCEECCEEEECCE
WYYSYSSGALAINTTVDGYRVNSDGERV
EEEEECCCEEEEEEEECCEEECCCCCCC
>Mature Secondary Structure
MKILPFIARGTSYYLKMSVKKLVPFLVVGLMLAAGDSVHAYSRGNGSIARGDDYPAYYKN
CCCCCEEECCCEEEEEEEHHHHHHHHHHHHHHHCCCCEEEEECCCCCEECCCCCCHHHCC
GSQEIDQWRMYSRQCTSFVAFRLSNVNGFEIPAAYGNANEWGHRARREGYRVDNTPTIGS
CCHHHHHHHHHHHHHHHEEEEEECCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCE
ITWSTAGTYGHVAWVSNVMGDQIEIEEYNYGYTESYNKRVIKANTMTGFIHFKDLDSGSV
EEECCCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECEEEEEEEEECCCCCC
GNSQSSASTGGTHYFKTKSAIKTEPLVSATVIDYYYPGEKVHYDQILEKDGYKWLSYTAY
CCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEECCCCEEEHHHHHHCCCCEEEEEEEE
NGSYRYVQLEAVNKNPLGNSVLSSTGGTHYFKIKSAIKTEPLVSATVIDYYYPGEKVHYD
CCCEEEEEEEEECCCCCCCHHHHCCCCEEEEEEECCCCCCCCEEEEEEEEECCCCEEEHH
QILEKDGYKWLSYTAYNGSRRYIQLEGVTSSQNYQNQSGNISSYGSNNSSTVGWKKINGS
HHHHCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCC
WYHFKSNGSKSTGWLKDGSSWYYLKLSGEMQTGWLKENGSWYYLGSSGAMKTGWYQVSGE
EEEEECCCCCCCCEEECCCCEEEEEECCCCEECEEEECCCEEEEECCCCEECCEEEECCE
WYYSYSSGALAINTTVDGYRVNSDGERV
EEEEECCCEEEEEEEECCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA