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The map label for this gene is amy [H]

Identifier: 116516517

GI number: 116516517

Start: 1244874

End: 1246328

Strand: Direct

Name: amy [H]

Synonym: SPD_1215

Alternate gene names: 116516517

Gene position: 1244874-1246328 (Clockwise)

Preceding gene: 116516775

Following gene: 116515504

Centisome position: 60.84

GC content: 45.77

Gene sequence:

>1455_bases
ATGCAAAATCAAACACTCATGCAATACTTTGAATGGTATCTGCCCCACGACGGTCAACACTGGACGCGTCTGGCTGAAAA
TGCTCCACACCTAGCTCATCTGGGGATCAGTCACGTCTGGATGCCACCAGCCTTCAAGGCAACCAACGAAAAAGATGTCG
GCTATGGGGTCTATGACTTATTTGACTTAGGAGAGTTCAACCAAAAAGGGACTGTCCGCACCAAGTATGGTTTCAAAGAA
GACTATCTTCAAGCCATTCAAGCCCTTAAAGCACAGGGAATTCAACCTATGGCCGATGTAGTTCTCAACCACAAGGCTGC
TGCCGATCACAGGGAAGCCTTTCAGGTTATCGAAGTTGATCCTGTAGACCGTACAGTTGAACTTGGAGAACCCTTCACCA
TCAATGGCTGGACTAGTTTTACCTTCGATGGTCGCCAAGATACCTATAATGGCTTCCACTGGCATTGGTACCACTTCACC
GGTACAGACTACGATGCCAAACGCAGTAAATCTGGGATTTATCTGATCCAAGGGGACAACAAGGGCTGGGCTAACGAGGA
ATTGGTCGATAACGAAAACGGAAACTACGACTACCTCATGTATGCCGACCTAGACTTTAAACATCCTGAAGTCATCCAAA
ACATCTATGACTGGGCTGATTGGTTCATGGAAACGACTGGTGTAGCTGGTTTCCGTTTGGATGCCGTTAAGCATATTGAC
TCTTTCTTTATGCGCAACTTCATCCGCGATATGAAGGAAAAATACGGTGACGATTTCTATGTTTTTGGTGAATTTTGGAA
CTCAGACAAGGAAGCCAATCTGGACTATCTCGAAAAAACGGAAGAACACTTTGACCTTGTCGATGTTCGTCTCCACCAGA
ATCTCTTTGAAGCCAGTCAAGCTGGCGCAAACTATGACCTTCGTGGCATTTTCACAGATAGCCTGGTTGAACTCAAGCCT
GACAAGGCTGTGACTTTTGTCGACAACCACGATACCCAACGAGGACAAGCCCTTGAGTCTACCGTTGAAGAATGGTTCAA
GCCAGCAGCCTATGCCCTCATTTTGTTACGCCAAGACGGCCTTCCATGTGTCTTTTACGGAGACTACTATGGGATTTCAG
GGCAGTATGCTCAACAAGATTTCAAAGAAATCCTTGACCGCCTCCTAGCCATCCGAAAAGACTTGGCCTATGGAGAACAA
AATGACTACTTTGACCATGCTAACTGTATCGGTTGGGTACGTTCAGGTGCTGAAAATCAATCCCCAATCGCAGTCCTTAT
CTCAAATGACCAAGAAAACAGCAAGTCAATGTTTGTCGGTCAAGAATGGACTAATCAAACCTTTGTAGATTTACTTGGTA
GCCACCAAGGTCAAGTTACAATTGATGAGGAAGGTTATGGACAATTCCCTGTCTCAGCTAGATCCGTAAGTGTCTGGGCA
GTCAATACCATCTAA

Upstream 100 bases:

>100_bases
AGCAGTTAAAATAGTTTCCTTCTATCTTACGCAAACGTTTGCGCTAATAGATACTTTATGATAGAATAAAGAACAAGATT
GACAAGTAAGAGGAAACATT

Downstream 100 bases:

>100_bases
TAGCTCATAATAACCAAGCTAGGTCCAAGCGGATTTGGCTTTTTTGTATTCACAAAAAGACCTACCCAAATGGATAGATC
TTTACTTGATTACAATTTAC

Product: cytoplasmic alpha-amylase

Products: NA

Alternate protein names: 1,4-alpha-D-glucan glucanohydrolase [H]

Number of amino acids: Translated: 484; Mature: 484

Protein sequence:

>484_residues
MQNQTLMQYFEWYLPHDGQHWTRLAENAPHLAHLGISHVWMPPAFKATNEKDVGYGVYDLFDLGEFNQKGTVRTKYGFKE
DYLQAIQALKAQGIQPMADVVLNHKAAADHREAFQVIEVDPVDRTVELGEPFTINGWTSFTFDGRQDTYNGFHWHWYHFT
GTDYDAKRSKSGIYLIQGDNKGWANEELVDNENGNYDYLMYADLDFKHPEVIQNIYDWADWFMETTGVAGFRLDAVKHID
SFFMRNFIRDMKEKYGDDFYVFGEFWNSDKEANLDYLEKTEEHFDLVDVRLHQNLFEASQAGANYDLRGIFTDSLVELKP
DKAVTFVDNHDTQRGQALESTVEEWFKPAAYALILLRQDGLPCVFYGDYYGISGQYAQQDFKEILDRLLAIRKDLAYGEQ
NDYFDHANCIGWVRSGAENQSPIAVLISNDQENSKSMFVGQEWTNQTFVDLLGSHQGQVTIDEEGYGQFPVSARSVSVWA
VNTI

Sequences:

>Translated_484_residues
MQNQTLMQYFEWYLPHDGQHWTRLAENAPHLAHLGISHVWMPPAFKATNEKDVGYGVYDLFDLGEFNQKGTVRTKYGFKE
DYLQAIQALKAQGIQPMADVVLNHKAAADHREAFQVIEVDPVDRTVELGEPFTINGWTSFTFDGRQDTYNGFHWHWYHFT
GTDYDAKRSKSGIYLIQGDNKGWANEELVDNENGNYDYLMYADLDFKHPEVIQNIYDWADWFMETTGVAGFRLDAVKHID
SFFMRNFIRDMKEKYGDDFYVFGEFWNSDKEANLDYLEKTEEHFDLVDVRLHQNLFEASQAGANYDLRGIFTDSLVELKP
DKAVTFVDNHDTQRGQALESTVEEWFKPAAYALILLRQDGLPCVFYGDYYGISGQYAQQDFKEILDRLLAIRKDLAYGEQ
NDYFDHANCIGWVRSGAENQSPIAVLISNDQENSKSMFVGQEWTNQTFVDLLGSHQGQVTIDEEGYGQFPVSARSVSVWA
VNTI
>Mature_484_residues
MQNQTLMQYFEWYLPHDGQHWTRLAENAPHLAHLGISHVWMPPAFKATNEKDVGYGVYDLFDLGEFNQKGTVRTKYGFKE
DYLQAIQALKAQGIQPMADVVLNHKAAADHREAFQVIEVDPVDRTVELGEPFTINGWTSFTFDGRQDTYNGFHWHWYHFT
GTDYDAKRSKSGIYLIQGDNKGWANEELVDNENGNYDYLMYADLDFKHPEVIQNIYDWADWFMETTGVAGFRLDAVKHID
SFFMRNFIRDMKEKYGDDFYVFGEFWNSDKEANLDYLEKTEEHFDLVDVRLHQNLFEASQAGANYDLRGIFTDSLVELKP
DKAVTFVDNHDTQRGQALESTVEEWFKPAAYALILLRQDGLPCVFYGDYYGISGQYAQQDFKEILDRLLAIRKDLAYGEQ
NDYFDHANCIGWVRSGAENQSPIAVLISNDQENSKSMFVGQEWTNQTFVDLLGSHQGQVTIDEEGYGQFPVSARSVSVWA
VNTI

Specific function: Unknown

COG id: COG0366

COG function: function code G; Glycosidases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family [H]

Homologues:

Organism=Escherichia coli, GI1788236, Length=494, Percent_Identity=42.914979757085, Blast_Score=383, Evalue=1e-107,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013776
- InterPro:   IPR015237
- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR006589
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF00128 Alpha-amylase; PF09154 DUF1939 [H]

EC number: =3.2.1.1 [H]

Molecular weight: Translated: 55880; Mature: 55880

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNQTLMQYFEWYLPHDGQHWTRLAENAPHLAHLGISHVWMPPAFKATNEKDVGYGVYDL
CCCHHHHHHHHHHCCCCCHHHHHHHHCCCCEECCCCCCEECCCCCCCCCCCCCCCCHHHH
FDLGEFNQKGTVRTKYGFKEDYLQAIQALKAQGIQPMADVVLNHKAAADHREAFQVIEVD
HHCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHCCCHHCCHHHCEEEEEEC
PVDRTVELGEPFTINGWTSFTFDGRQDTYNGFHWHWYHFTGTDYDAKRSKSGIYLIQGDN
CCCCEEECCCCEEECCEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCC
KGWANEELVDNENGNYDYLMYADLDFKHPEVIQNIYDWADWFMETTGVAGFRLDAVKHID
CCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
SFFMRNFIRDMKEKYGDDFYVFGEFWNSDKEANLDYLEKTEEHFDLVDVRLHQNLFEASQ
HHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AGANYDLRGIFTDSLVELKPDKAVTFVDNHDTQRGQALESTVEEWFKPAAYALILLRQDG
CCCCCEEEEEECCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCC
LPCVFYGDYYGISGQYAQQDFKEILDRLLAIRKDLAYGEQNDYFDHANCIGWVRSGAENQ
CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCC
SPIAVLISNDQENSKSMFVGQEWTNQTFVDLLGSHQGQVTIDEEGYGQFPVSARSVSVWA
CCEEEEEECCCCCCCEEEECCCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCCCEEEEEE
VNTI
EECC
>Mature Secondary Structure
MQNQTLMQYFEWYLPHDGQHWTRLAENAPHLAHLGISHVWMPPAFKATNEKDVGYGVYDL
CCCHHHHHHHHHHCCCCCHHHHHHHHCCCCEECCCCCCEECCCCCCCCCCCCCCCCHHHH
FDLGEFNQKGTVRTKYGFKEDYLQAIQALKAQGIQPMADVVLNHKAAADHREAFQVIEVD
HHCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHCCCHHCCHHHCEEEEEEC
PVDRTVELGEPFTINGWTSFTFDGRQDTYNGFHWHWYHFTGTDYDAKRSKSGIYLIQGDN
CCCCEEECCCCEEECCEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCC
KGWANEELVDNENGNYDYLMYADLDFKHPEVIQNIYDWADWFMETTGVAGFRLDAVKHID
CCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
SFFMRNFIRDMKEKYGDDFYVFGEFWNSDKEANLDYLEKTEEHFDLVDVRLHQNLFEASQ
HHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AGANYDLRGIFTDSLVELKPDKAVTFVDNHDTQRGQALESTVEEWFKPAAYALILLRQDG
CCCCCEEEEEECCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCC
LPCVFYGDYYGISGQYAQQDFKEILDRLLAIRKDLAYGEQNDYFDHANCIGWVRSGAENQ
CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCC
SPIAVLISNDQENSKSMFVGQEWTNQTFVDLLGSHQGQVTIDEEGYGQFPVSARSVSVWA
CCEEEEEECCCCCCCEEEECCCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCCCEEEEEE
VNTI
EECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3924897; 3876333; 3009417; 2999073; 11226887 [H]