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The map label for this gene is araC [C]

Identifier: 116516390

GI number: 116516390

Start: 595852

End: 596589

Strand: Direct

Name: araC [C]

Synonym: SPD_0574

Alternate gene names: 116516390

Gene position: 595852-596589 (Clockwise)

Preceding gene: 116515600

Following gene: 116515466

Centisome position: 29.12

GC content: 40.65

Gene sequence:

>738_bases
ATGACCTACACAATCTTAATCGTAGAAGATGAATATCTGGTAAGACAAGGTTTGACTAAACTGGTCAATGTAGCAGCCTA
CGATATGGAAATCATCGGTCAGGCTGAAAATGGAAGGCAGGCTTGGGAATTGATCCAAAAGCAGGTGCCAGATATCATTT
TAACCGATATCAACATGCCTCATCTAAATGGCATCCAGTTGGCCAGTCTGGTACGAGAAACCTATCCTCAGGTTCATTTG
GTCTTTTTAACAGGTTACGATGATTTTGATTATGCCTTGTCTGCTGTCAAACTAGGTGTGGACGACTACCTGCTCAAACC
CTTTTCTCGTCAGGATATTGAGGAAATGTTGGGGAAAATCAAACAAAAACTAGACAAGGAAGAGAAAGAAGAGCAGTTAC
AAGATTTATTGACTAATAGGTTTGAAGGAAACATGGCCCAGAAAATCCAGTCTCATCTGGCTGATAGCCAATTTAGTTTA
AAGTCTTTAGCCAGTGACTTAGGTTTTAGTCCGACCTATCTGAGTTCCTTGATTAAGAAAGAGTTGGGCTTGCCTTTTCA
GGATTATCTGGTGAGAGAACGTGTTAAACAAGCCAAGCTCTTGCTTTTAACTACAGATCTGAAGATTTATGAGATCGCAG
AGAAGGTTGGTTTTGAAGATATGAACTATTTTACCCAACGTTTTAAGCAGATTGCAGGTGTGACACCTCGTCAGTTTAAG
AAGGGAGAAGACCGATGA

Upstream 100 bases:

>100_bases
AGTTTACTTTTTGATTTTTATTGAGTATAAGAGGTCTTTCCTAAGCAGTTAGAGGAGAATTTTGCTATACTGATACTAGT
AAGTGGTAAAGGAGCAGAGC

Downstream 100 bases:

>100_bases
AGCGTTCTTCTCTTTTAGTTAGAATGGTTATTTCCATCTTTCTGGTCTTTCTCATTCTCCTAGCTCTGGTTGGAACTTTC
TACTATCAATCAAGTTCTTC

Product: DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MTYTILIVEDEYLVRQGLTKLVNVAAYDMEIIGQAENGRQAWELIQKQVPDIILTDINMPHLNGIQLASLVRETYPQVHL
VFLTGYDDFDYALSAVKLGVDDYLLKPFSRQDIEEMLGKIKQKLDKEEKEEQLQDLLTNRFEGNMAQKIQSHLADSQFSL
KSLASDLGFSPTYLSSLIKKELGLPFQDYLVRERVKQAKLLLLTTDLKIYEIAEKVGFEDMNYFTQRFKQIAGVTPRQFK
KGEDR

Sequences:

>Translated_245_residues
MTYTILIVEDEYLVRQGLTKLVNVAAYDMEIIGQAENGRQAWELIQKQVPDIILTDINMPHLNGIQLASLVRETYPQVHL
VFLTGYDDFDYALSAVKLGVDDYLLKPFSRQDIEEMLGKIKQKLDKEEKEEQLQDLLTNRFEGNMAQKIQSHLADSQFSL
KSLASDLGFSPTYLSSLIKKELGLPFQDYLVRERVKQAKLLLLTTDLKIYEIAEKVGFEDMNYFTQRFKQIAGVTPRQFK
KGEDR
>Mature_244_residues
TYTILIVEDEYLVRQGLTKLVNVAAYDMEIIGQAENGRQAWELIQKQVPDIILTDINMPHLNGIQLASLVRETYPQVHLV
FLTGYDDFDYALSAVKLGVDDYLLKPFSRQDIEEMLGKIKQKLDKEEKEEQLQDLLTNRFEGNMAQKIQSHLADSQFSLK
SLASDLGFSPTYLSSLIKKELGLPFQDYLVRERVKQAKLLLLTTDLKIYEIAEKVGFEDMNYFTQRFKQIAGVTPRQFKK
GEDR

Specific function: Probable member of the two-component regulatory system SAB0162c/SAB0161c [H]

COG id: COG4753

COG function: function code T; Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=116, Percent_Identity=37.9310344827586, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1790299, Length=135, Percent_Identity=27.4074074074074, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI87082052, Length=124, Percent_Identity=31.4516129032258, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1788724, Length=124, Percent_Identity=32.258064516129, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788550, Length=132, Percent_Identity=29.5454545454545, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790863, Length=112, Percent_Identity=33.9285714285714, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790437, Length=115, Percent_Identity=30.4347826086957, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786784, Length=140, Percent_Identity=28.5714285714286, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787473, Length=110, Percent_Identity=34.5454545454545, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1790860, Length=123, Percent_Identity=26.0162601626016, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00165 HTH_AraC; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 28263; Mature: 28132

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYTILIVEDEYLVRQGLTKLVNVAAYDMEIIGQAENGRQAWELIQKQVPDIILTDINMP
CEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEECCCCC
HLNGIQLASLVRETYPQVHLVFLTGYDDFDYALSAVKLGVDDYLLKPFSRQDIEEMLGKI
CCCHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCHHHHHHCCCCHHHHHHHHHHH
KQKLDKEEKEEQLQDLLTNRFEGNMAQKIQSHLADSQFSLKSLASDLGFSPTYLSSLIKK
HHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
ELGLPFQDYLVRERVKQAKLLLLTTDLKIYEIAEKVGFEDMNYFTQRFKQIAGVTPRQFK
HHCCCHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHC
KGEDR
CCCCC
>Mature Secondary Structure 
TYTILIVEDEYLVRQGLTKLVNVAAYDMEIIGQAENGRQAWELIQKQVPDIILTDINMP
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEECCCCC
HLNGIQLASLVRETYPQVHLVFLTGYDDFDYALSAVKLGVDDYLLKPFSRQDIEEMLGKI
CCCHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCHHHHHHCCCCHHHHHHHHHHH
KQKLDKEEKEEQLQDLLTNRFEGNMAQKIQSHLADSQFSLKSLASDLGFSPTYLSSLIKK
HHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
ELGLPFQDYLVRERVKQAKLLLLTTDLKIYEIAEKVGFEDMNYFTQRFKQIAGVTPRQFK
HHCCCHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHC
KGEDR
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA