Click here to switch to the map view.

The map label for this gene is yciT [H]

Identifier: 116516292

GI number: 116516292

Start: 218510

End: 219256

Strand: Direct

Name: yciT [H]

Synonym: SPD_0230

Alternate gene names: 116516292

Gene position: 218510-219256 (Clockwise)

Preceding gene: 116516487

Following gene: 116517202

Centisome position: 10.68

GC content: 31.59

Gene sequence:

>747_bases
ATGAAAAGATTGGAACAAATTATTAAATTAGTATCAGAATATGAAAAGATCGACGTTAATACATTATCGGAAAAATTAAA
TGTATCGAAAGTAACGATTAGAAAAGATTTAGATAAATTAGAGTCAAAAGGTTTATTACACAGAGAGCATGGATATGCTG
TATTAAATAGTGGAGATGACTTAAATGTACGTTTGTCAATTAACTATGAAATTAAGAGAAAAATTGTTCAGGAAGCAGTA
AAATTGGTGTCAGATAATGAAACAATAATGATAGAATCTGGATCGACCTGTGCTTTACTTGCTGAGGAAATTTGCAAGCA
AAAAAGAAATGTTACGATTGTAACAAATTCATTTTTTATAGCAAATTTTGTGAGAGCTTATGATTCATGTCGTATTATTG
TTCTTGGTGGAGAGTTTCAGAAGGATTCACAGGTTACTGTGGGACCTTTATTAAAAGAAATGATACAGACTTTTCATGTG
CATCAAGCTTTTGTTGGGACAGATGGTTACGATAAAGAGATGGGCTTTACAGGAAAAGATTTAATGCGCAGTGAGGTAGT
TCAATATATTTCAGCAGCGTCGGATAAAGTCATTGTACTAACTGACTCAAGTAAATTTGATAAAAGGGGTACAGTAAGAA
GATTTGCTTTAAGTCAAGTCTATGAAGTAATAACAGACGAAAAACTTTCTAAACAAAATATAGCTACATTAGAAAATGCT
GGGATAATGGTTAAGGTAGTTTCGTAA

Upstream 100 bases:

>100_bases
GTCTATCCTATCACAAAAACGAAAGAAAAACAATTACGAACGAAAGTTTAATTTGTTGTTTTTTGCTTTTTATTTTGGTA
GAATAAAACGGAGGTGTAAA

Downstream 100 bases:

>100_bases
GAGGTTAAATGTATGAATCAAGATAGGAATAAACTGCTCTCTAAAATTGCTTATCTGTATTATATTGAAAACTTAAATCA
GTCACAAATAGCAGCAAAAT

Product: transcriptional regulator, DeoR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MKRLEQIIKLVSEYEKIDVNTLSEKLNVSKVTIRKDLDKLESKGLLHREHGYAVLNSGDDLNVRLSINYEIKRKIVQEAV
KLVSDNETIMIESGSTCALLAEEICKQKRNVTIVTNSFFIANFVRAYDSCRIIVLGGEFQKDSQVTVGPLLKEMIQTFHV
HQAFVGTDGYDKEMGFTGKDLMRSEVVQYISAASDKVIVLTDSSKFDKRGTVRRFALSQVYEVITDEKLSKQNIATLENA
GIMVKVVS

Sequences:

>Translated_248_residues
MKRLEQIIKLVSEYEKIDVNTLSEKLNVSKVTIRKDLDKLESKGLLHREHGYAVLNSGDDLNVRLSINYEIKRKIVQEAV
KLVSDNETIMIESGSTCALLAEEICKQKRNVTIVTNSFFIANFVRAYDSCRIIVLGGEFQKDSQVTVGPLLKEMIQTFHV
HQAFVGTDGYDKEMGFTGKDLMRSEVVQYISAASDKVIVLTDSSKFDKRGTVRRFALSQVYEVITDEKLSKQNIATLENA
GIMVKVVS
>Mature_248_residues
MKRLEQIIKLVSEYEKIDVNTLSEKLNVSKVTIRKDLDKLESKGLLHREHGYAVLNSGDDLNVRLSINYEIKRKIVQEAV
KLVSDNETIMIESGSTCALLAEEICKQKRNVTIVTNSFFIANFVRAYDSCRIIVLGGEFQKDSQVTVGPLLKEMIQTFHV
HQAFVGTDGYDKEMGFTGKDLMRSEVVQYISAASDKVIVLTDSSKFDKRGTVRRFALSQVYEVITDEKLSKQNIATLENA
GIMVKVVS

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787540, Length=248, Percent_Identity=41.5322580645161, Blast_Score=191, Evalue=4e-50,
Organism=Escherichia coli, GI1789519, Length=252, Percent_Identity=27.3809523809524, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1789170, Length=232, Percent_Identity=26.7241379310345, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788069, Length=238, Percent_Identity=29.8319327731092, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1789059, Length=247, Percent_Identity=30.7692307692308, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1790635, Length=248, Percent_Identity=25.8064516129032, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI226510968, Length=236, Percent_Identity=26.271186440678, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1789829, Length=228, Percent_Identity=28.0701754385965, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI87082344, Length=231, Percent_Identity=23.8095238095238, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1790753, Length=247, Percent_Identity=25.5060728744939, Blast_Score=78, Evalue=4e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 27947; Mature: 27947

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLEQIIKLVSEYEKIDVNTLSEKLNVSKVTIRKDLDKLESKGLLHREHGYAVLNSGDD
CHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHCCCEEECCCEEEEECCCC
LNVRLSINYEIKRKIVQEAVKLVSDNETIMIESGSTCALLAEEICKQKRNVTIVTNSFFI
EEEEEEECHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEECCHHH
ANFVRAYDSCRIIVLGGEFQKDSQVTVGPLLKEMIQTFHVHQAFVGTDGYDKEMGFTGKD
HHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
LMRSEVVQYISAASDKVIVLTDSSKFDKRGTVRRFALSQVYEVITDEKLSKQNIATLENA
HHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHCCCEECCC
GIMVKVVS
CEEEEEEC
>Mature Secondary Structure
MKRLEQIIKLVSEYEKIDVNTLSEKLNVSKVTIRKDLDKLESKGLLHREHGYAVLNSGDD
CHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHCCCEEECCCEEEEECCCC
LNVRLSINYEIKRKIVQEAVKLVSDNETIMIESGSTCALLAEEICKQKRNVTIVTNSFFI
EEEEEEECHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEECCHHH
ANFVRAYDSCRIIVLGGEFQKDSQVTVGPLLKEMIQTFHVHQAFVGTDGYDKEMGFTGKD
HHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
LMRSEVVQYISAASDKVIVLTDSSKFDKRGTVRRFALSQVYEVITDEKLSKQNIATLENA
HHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHCCCEECCC
GIMVKVVS
CEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]