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The map label for this gene is pavA [H]

Identifier: 116516285

GI number: 116516285

Start: 868727

End: 870382

Strand: Reverse

Name: pavA [H]

Synonym: SPD_0854

Alternate gene names: 116516285

Gene position: 870382-868727 (Counterclockwise)

Preceding gene: 116515927

Following gene: 116516286

Centisome position: 42.54

GC content: 42.63

Gene sequence:

>1656_bases
ATGTCATTTGACGGATTTTTTTTACACCACATAGTTGAGGAATTGCGAAGCGAATTAGTGAATGGTCGCATCCAGAAAAT
CAATCAGCCTTTTGAACAAGAGTTGGTCTTGCAAATCCGCAGCAATCGCCAAAGCCATCGCCTGCTCCTTTCTGCCCATC
CAGTTTTTGGACGCATTCAGCTGACCCAAACGACTTTTGAAAATCCAGCTCAACCTTCTACCTTTATCATGGTTTTGAGA
AAGTATTTGCAGGGGGCCCTGATTGAGTCGATTGAGCAAGTGGAAAATGACCGTATTGTGGAAATGACAGTTTCCAATAA
AAACGAGATTGGAGACCATATCCAGGCTACCTTGATTATCGAAATTATGGGGAAACACAGTAATATTCTACTGGTCGATA
AAAGCAGTCATAAAATCCTCGAAGTTATCAAACACGTCGGTTTTTCACAAAATAGCTACCGCACCTTACTTCCAGGATCG
ACCTATATCGCTCCGCCAAGTACAGAATCTCTCAATCCTTTTACTATCAAGGATGAAAAGCTCTTTGAAATCCTGCAAAC
CCAAGAACTAACAGCAAAAAATCTTCAAAGCCTCTTTCAAGGTCTGGGACGCGATACGGCAAATGAATTGGAAAGGATAC
TGGTTAGTGAAAAACTTTCCGCTTTCCGAAATTTTTTCAATCAAGAAACCAAGCCATGCTTGACTGAGACTTCCTTCAGT
CCAGTTCCTTTTGCAAATCAGGCGGGAGAGCCTTTTGCAAATCTTTCTGATTTGTTGGACACCTACTATAAGAATAAGGC
TGAGCGCGACCGCGTCAAACAACAGGCCAGTGAACTGATTCGTCGTGTTGAAAATGAACTTCAGAAAAACCGACACAAAC
TCAAAAAACAGGAAAAAGAGTTACTGGCGACAGACAACGCTGAAGAATTTCGTCAAAAAGGAGAATTGCTGACAACCTTC
CTCCACCAAGTGCCTAACGACCAAGACCAGGTTATCCTAGACAACTACTATACCAACCAACCTATCATGATTGCGCTTGA
TAAGGCTCTGACTCCCAACCAGAATGCCCAACGCTATTTTAAACGGTATCAGAAACTCAAAGAAGCTGTCAAATACTTGA
CTGATTTGATTGAAGAAACCAAAGCCACTATTCTCTATCTGGAAAGTGTAGAAACCGTCCTCAACCAAGCTGGACTGGAA
GAAATCGCTGAAATCCGTGAAGAATTGATTCAAACAGGTTTTATCCGCAGAAGACAACGGGAGAAAATCCAGAAACGCAA
AAAACTAGAACAATATCTAGCAAGCGATGGCAAAACCATCATCTATGTCGGACGAAACAATCTTCAAAATGAGGAATTGA
CCTTTAAAATGGCCCGCAAGGAGGAACTTTGGTTCCATGCTAAGGACATTCCTGGAAGCCATGTTGTCATCTCAGGAAAT
CTTGACCCATCTGATGCAGTCAAGACAGACGCAGCAGAGTTAGCTGCCTACTTCTCTCAAGGGCGCCTGTCGAATCTGGT
GCAGGTAGATATGATTGAAGTCAAAAAACTCAATAAACCAACTGGTGGAAAACCCGGCTTTGTCACTTACACAGGACAAA
AGACCCTCCGCGTCACACCAGACTCCAAAAAAATTGCATCCATGAAAAAATCCTGA

Upstream 100 bases:

>100_bases
TTCTCGTTTCTCTTTACTTGGCTTTATTATACCACATTTCCATGATTTTATTCTACCTTTTTGATATAATACTATGGAAT
ACAATCACAAGGAGAGAACG

Downstream 100 bases:

>100_bases
TTTTACTTGAAATCAGGATTTTTAACTTACTATTCACTCAAATCATATTCACTTATAGTACTAATCTTTGCCACCTAGCT
TCTCATTGATTTTCATCATC

Product: adherence and virulence protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 551; Mature: 550

Protein sequence:

>551_residues
MSFDGFFLHHIVEELRSELVNGRIQKINQPFEQELVLQIRSNRQSHRLLLSAHPVFGRIQLTQTTFENPAQPSTFIMVLR
KYLQGALIESIEQVENDRIVEMTVSNKNEIGDHIQATLIIEIMGKHSNILLVDKSSHKILEVIKHVGFSQNSYRTLLPGS
TYIAPPSTESLNPFTIKDEKLFEILQTQELTAKNLQSLFQGLGRDTANELERILVSEKLSAFRNFFNQETKPCLTETSFS
PVPFANQAGEPFANLSDLLDTYYKNKAERDRVKQQASELIRRVENELQKNRHKLKKQEKELLATDNAEEFRQKGELLTTF
LHQVPNDQDQVILDNYYTNQPIMIALDKALTPNQNAQRYFKRYQKLKEAVKYLTDLIEETKATILYLESVETVLNQAGLE
EIAEIREELIQTGFIRRRQREKIQKRKKLEQYLASDGKTIIYVGRNNLQNEELTFKMARKEELWFHAKDIPGSHVVISGN
LDPSDAVKTDAAELAAYFSQGRLSNLVQVDMIEVKKLNKPTGGKPGFVTYTGQKTLRVTPDSKKIASMKKS

Sequences:

>Translated_551_residues
MSFDGFFLHHIVEELRSELVNGRIQKINQPFEQELVLQIRSNRQSHRLLLSAHPVFGRIQLTQTTFENPAQPSTFIMVLR
KYLQGALIESIEQVENDRIVEMTVSNKNEIGDHIQATLIIEIMGKHSNILLVDKSSHKILEVIKHVGFSQNSYRTLLPGS
TYIAPPSTESLNPFTIKDEKLFEILQTQELTAKNLQSLFQGLGRDTANELERILVSEKLSAFRNFFNQETKPCLTETSFS
PVPFANQAGEPFANLSDLLDTYYKNKAERDRVKQQASELIRRVENELQKNRHKLKKQEKELLATDNAEEFRQKGELLTTF
LHQVPNDQDQVILDNYYTNQPIMIALDKALTPNQNAQRYFKRYQKLKEAVKYLTDLIEETKATILYLESVETVLNQAGLE
EIAEIREELIQTGFIRRRQREKIQKRKKLEQYLASDGKTIIYVGRNNLQNEELTFKMARKEELWFHAKDIPGSHVVISGN
LDPSDAVKTDAAELAAYFSQGRLSNLVQVDMIEVKKLNKPTGGKPGFVTYTGQKTLRVTPDSKKIASMKKS
>Mature_550_residues
SFDGFFLHHIVEELRSELVNGRIQKINQPFEQELVLQIRSNRQSHRLLLSAHPVFGRIQLTQTTFENPAQPSTFIMVLRK
YLQGALIESIEQVENDRIVEMTVSNKNEIGDHIQATLIIEIMGKHSNILLVDKSSHKILEVIKHVGFSQNSYRTLLPGST
YIAPPSTESLNPFTIKDEKLFEILQTQELTAKNLQSLFQGLGRDTANELERILVSEKLSAFRNFFNQETKPCLTETSFSP
VPFANQAGEPFANLSDLLDTYYKNKAERDRVKQQASELIRRVENELQKNRHKLKKQEKELLATDNAEEFRQKGELLTTFL
HQVPNDQDQVILDNYYTNQPIMIALDKALTPNQNAQRYFKRYQKLKEAVKYLTDLIEETKATILYLESVETVLNQAGLEE
IAEIREELIQTGFIRRRQREKIQKRKKLEQYLASDGKTIIYVGRNNLQNEELTFKMARKEELWFHAKDIPGSHVVISGNL
DPSDAVKTDAAELAAYFSQGRLSNLVQVDMIEVKKLNKPTGGKPGFVTYTGQKTLRVTPDSKKIASMKKS

Specific function: Unknown

COG id: COG1293

COG function: function code K; Predicted RNA-binding protein homologous to eukaryotic snRNP

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SDCCAG1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008532
- InterPro:   IPR008616 [H]

Pfam domain/function: PF05670 DUF814; PF05833 FbpA [H]

EC number: NA

Molecular weight: Translated: 63281; Mature: 63150

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFDGFFLHHIVEELRSELVNGRIQKINQPFEQELVLQIRSNRQSHRLLLSAHPVFGRIQ
CCCCHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHCCCCHHEEEEEECCCEEEEE
LTQTTFENPAQPSTFIMVLRKYLQGALIESIEQVENDRIVEMTVSNKNEIGDHIQATLII
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHE
EIMGKHSNILLVDKSSHKILEVIKHVGFSQNSYRTLLPGSTYIAPPSTESLNPFTIKDEK
EEECCCCCEEEEECCCHHHHHHHHHCCCCCCCCEEECCCCCEECCCCCCCCCCCEECHHH
LFEILQTQELTAKNLQSLFQGLGRDTANELERILVSEKLSAFRNFFNQETKPCLTETSFS
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PVPFANQAGEPFANLSDLLDTYYKNKAERDRVKQQASELIRRVENELQKNRHKLKKQEKE
CCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLATDNAEEFRQKGELLTTFLHQVPNDQDQVILDNYYTNQPIMIALDKALTPNQNAQRYF
HHHCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCEECCCCEEEEECCCCCCCCHHHHHH
KRYQKLKEAVKYLTDLIEETKATILYLESVETVLNQAGLEEIAEIREELIQTGFIRRRQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
EKIQKRKKLEQYLASDGKTIIYVGRNNLQNEELTFKMARKEELWFHAKDIPGSHVVISGN
HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHEEEECCCCCCEEEEECC
LDPSDAVKTDAAELAAYFSQGRLSNLVQVDMIEVKKLNKPTGGKPGFVTYTGQKTLRVTP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEEECC
DSKKIASMKKS
CHHHHHHCCCC
>Mature Secondary Structure 
SFDGFFLHHIVEELRSELVNGRIQKINQPFEQELVLQIRSNRQSHRLLLSAHPVFGRIQ
CCCHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHCCCCHHEEEEEECCCEEEEE
LTQTTFENPAQPSTFIMVLRKYLQGALIESIEQVENDRIVEMTVSNKNEIGDHIQATLII
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHE
EIMGKHSNILLVDKSSHKILEVIKHVGFSQNSYRTLLPGSTYIAPPSTESLNPFTIKDEK
EEECCCCCEEEEECCCHHHHHHHHHCCCCCCCCEEECCCCCEECCCCCCCCCCCEECHHH
LFEILQTQELTAKNLQSLFQGLGRDTANELERILVSEKLSAFRNFFNQETKPCLTETSFS
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PVPFANQAGEPFANLSDLLDTYYKNKAERDRVKQQASELIRRVENELQKNRHKLKKQEKE
CCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLATDNAEEFRQKGELLTTFLHQVPNDQDQVILDNYYTNQPIMIALDKALTPNQNAQRYF
HHHCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCEECCCCEEEEECCCCCCCCHHHHHH
KRYQKLKEAVKYLTDLIEETKATILYLESVETVLNQAGLEEIAEIREELIQTGFIRRRQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
EKIQKRKKLEQYLASDGKTIIYVGRNNLQNEELTFKMARKEELWFHAKDIPGSHVVISGN
HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHEEEECCCCCCEEEEECC
LDPSDAVKTDAAELAAYFSQGRLSNLVQVDMIEVKKLNKPTGGKPGFVTYTGQKTLRVTP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEEECC
DSKKIASMKKS
CHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377; 9534248 [H]