Definition | Streptococcus pneumoniae D39, complete genome. |
---|---|
Accession | NC_008533 |
Length | 2,046,115 |
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The map label for this gene is mngB [H]
Identifier: 116516168
GI number: 116516168
Start: 1940229
End: 1942874
Strand: Reverse
Name: mngB [H]
Synonym: SPD_1971
Alternate gene names: 116516168
Gene position: 1942874-1940229 (Counterclockwise)
Preceding gene: 116517029
Following gene: 116516983
Centisome position: 94.95
GC content: 44.9
Gene sequence:
>2646_bases ATGGAAAATGTTGTTGTACATATTATCTCACATAGTCACTGGGATCGTGAGTGGTACTTGCCTTTTGAAAGCCATCGTAT GCAGTTGGTGGAATTGTTTGACAATCTCTTTGATCTCTTTGAAAATGACCCTGAGTTCAAGAGTTTCCACTTGGATGGAC AAACTATTGTCCTTGATGACTACTTACAAATTCGCCCTGAAAATCGCGACAAGGTCCAACGCTACATTGACGAGGGCAAA CTTAAAATTGGTCCCTTTTACATCTTGCAGGATGACTACTTGATCTCCAGTGAAGCCAATGTCCGCAATACCTTGATTGG TCAACAAGAAGCTGCCAAATGGGGTAAATCAACCCAGATTGGCTACTTTCCAGATACCTTTGGAAATATGGGACAAGCGC CTCAAATTCTTCAAAAATCAGGCATTCACGTGGCGGCCTTTGGTCGTGGTGTGAAGCCGATTGGATTTGACAACCAAGTC CTTGAAGATGAGCAGTTTACATCCCAGTTTTCAGAAATGTACTGGCAGGGTGTGGATGGTAGTCGTGTTTTAGGTATTCT CTTTGCCAACTGGTACAGTAATGGGAATGAAATCCCAGTTGACAAAGATGAGGCCTTGACCTTCTGGAAACAAAAATTGT CAGATGTGCGTGCCTACGCTTCGACCAACCAATGGTTGATGATGAACGGCTGTGACCACCAGCCTGTACAGAAAAATCTG AGCGAAGCCATTCGTGTGGCAAATGAACTCTTCCCGGATGTAATCTTTGTTCATAGTTCTTTTGATGAATATGTTCAAGC TGTAGAAGGTGCGCTTCCTGAACACTTATCAACTGTTACAGGCGAGTTGACCAGTCAGGAAACAGATGGCTGGTACACAC TTGCCAACACTTCTTCATCCCGCATTTACCTAAAACAAGCCTTCCAAGAAAATAGCAACCTCCTAGAGCAAGTGGTAGAA CCCTTGACTATTATCACTGGTGGACACAACCACAAGGACCAGTTGACCTATGCTTGGAAAACACTTTTGCAGAATGCGCC ACATGATAGTATCTGTGGCTGTAGCGTGGACGAAGTTCACCGCGAGATGGAAACGCGTTTTGCCAAGGTCAACCAAGTAG GAAACTTTGTTAAAAGTAATTTGCTCAACGAGTGGAAGGGTAAAATTGCTACGGATAAGGCTCAAAGTGACTATCTCTTT ACTGTCATTAACACAGGCTTGCATGATAAGGTCGATACTGTCTGCACAGTGATTGATGTGGCGACTTGTGATTTCAAGGA ATTGCACCCAACAGAAGGCTACAAAAAGATGGCTGCTCTTATCTTGCCAAGTTACCGTGTGGAGGACTTGGATGGTCGTC CTGTAGAGGCTACAATCGAAGACCTCGGAGCTAATTTTGAATACGATTTACCAAAAGACAAGTTCCGCCAAGCTCGTATT GCTCGACAAGTGCGCGTGACCATTCCAGTTCACCTAGCACCGCTTTCTTGGACAACCTTCCAATTGCTGGAAGGAGAACA AGAACACCGTGAGGGTATTTACCAAAACGGAGTGATTGATACACCATTCGTAACGGTGAGTGTGGATGACAACATCACAG TCTATGATAAGACAACTCACGAAGCCTATGAAGACTTTATCCGCTTTGAAGACCGTGGGGACATCGGAAACGAGTATATC TATTTCCAACCAAAAGGAACAGAGCCAATCTTTGCAGAGCTTAAGGACCACGAGGTCTTGGAAAACACAGATCGCTATGC TAAAATCTTGCTCAAACATGAATTGACCGTGCCTGTCAGTGCGGATGAAAAGCTAGAAGAAGAGCAACAAGGTATCATCG AGTTTATGAAGCGTGAGGCTGGACGGTCAGAAGAATTGACAAACATTCCTCTGGAAACTGAGTTGACTGTCTTCGTTGAC AATCCACAAATCCGCTTCAAGACTCGCTTTACTAACACTGCCAAGGATCACCGTATCCGTCTCTTGGTCAAGACTCATAA CACGCGTCCAAGCAATGATTCTGAAAGTATCTATGAGGTGGTGACACGACCAAACAAACCAGCTGCTTCATGGGAAAACC CTGAAAATCCTCAACACCAACAAGCTTTTGTCAGTCTGTATGACGATGAAAAAGGGGTGACTGTATCCAACAAGGGATTG AATGAATACGAAATCCTTGGGGATAACACCATTGCCGTGACCATTTTGCGTGCATCAGGTGAGCTAGGTGACTGGGGCTA CTTCCCAACGCCAGAAGCACAATGCTTGCGGGAGTTTGAAGTCGAGTTTGCACTTGAATGCCACCAAGCCCAAGAACGCT TCTCAGCCTATCGTCGTGCCAAAGCCTTGCAGACACCGTTTACCAGCCTTCAGCTTGCTAGACAGGAAGGAAGCGTGGTT GCGACTGGTAGCCTCTTGAGCCATTCTGTTCTCAGCATACCGCAAGTTTGTCCAACAGCCTTTAAGGTAGCTGAAAATGA AGAAGGCTATGTGCTTCGTTACTACAATATGTGTAGTGAAAATGTACGTGTGCCAGAAAGTCAACATCTCTTCCTTGACC TACTTGAACGACCATACCCAGTTCATTCAGGACTATTGGCTCCACAAGAGATTCGTACAGAATTCATCAAAAAAGAAGAA ATTTAA
Upstream 100 bases:
>100_bases TATCCGCTAAGGGGCTCGCTTTAGCTCAACCGATTCTTATCAGAATCACAAGTTTACATTTAAAACGTTAAAATTTAAAT TTAGAATGAGGTTTTACTTC
Downstream 100 bases:
>100_bases TTTCAAAAAGTAAACATCAAAAGAAAGGAGGGGCGAAAAAGTAAGGACTAACTGCTGATTCGCCCCTTTTTATGGTAAAA ACAATGACCATTGCAACGAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 881; Mature: 881
Protein sequence:
>881_residues MENVVVHIISHSHWDREWYLPFESHRMQLVELFDNLFDLFENDPEFKSFHLDGQTIVLDDYLQIRPENRDKVQRYIDEGK LKIGPFYILQDDYLISSEANVRNTLIGQQEAAKWGKSTQIGYFPDTFGNMGQAPQILQKSGIHVAAFGRGVKPIGFDNQV LEDEQFTSQFSEMYWQGVDGSRVLGILFANWYSNGNEIPVDKDEALTFWKQKLSDVRAYASTNQWLMMNGCDHQPVQKNL SEAIRVANELFPDVIFVHSSFDEYVQAVEGALPEHLSTVTGELTSQETDGWYTLANTSSSRIYLKQAFQENSNLLEQVVE PLTIITGGHNHKDQLTYAWKTLLQNAPHDSICGCSVDEVHREMETRFAKVNQVGNFVKSNLLNEWKGKIATDKAQSDYLF TVINTGLHDKVDTVCTVIDVATCDFKELHPTEGYKKMAALILPSYRVEDLDGRPVEATIEDLGANFEYDLPKDKFRQARI ARQVRVTIPVHLAPLSWTTFQLLEGEQEHREGIYQNGVIDTPFVTVSVDDNITVYDKTTHEAYEDFIRFEDRGDIGNEYI YFQPKGTEPIFAELKDHEVLENTDRYAKILLKHELTVPVSADEKLEEEQQGIIEFMKREAGRSEELTNIPLETELTVFVD NPQIRFKTRFTNTAKDHRIRLLVKTHNTRPSNDSESIYEVVTRPNKPAASWENPENPQHQQAFVSLYDDEKGVTVSNKGL NEYEILGDNTIAVTILRASGELGDWGYFPTPEAQCLREFEVEFALECHQAQERFSAYRRAKALQTPFTSLQLARQEGSVV ATGSLLSHSVLSIPQVCPTAFKVAENEEGYVLRYYNMCSENVRVPESQHLFLDLLERPYPVHSGLLAPQEIRTEFIKKEE I
Sequences:
>Translated_881_residues MENVVVHIISHSHWDREWYLPFESHRMQLVELFDNLFDLFENDPEFKSFHLDGQTIVLDDYLQIRPENRDKVQRYIDEGK LKIGPFYILQDDYLISSEANVRNTLIGQQEAAKWGKSTQIGYFPDTFGNMGQAPQILQKSGIHVAAFGRGVKPIGFDNQV LEDEQFTSQFSEMYWQGVDGSRVLGILFANWYSNGNEIPVDKDEALTFWKQKLSDVRAYASTNQWLMMNGCDHQPVQKNL SEAIRVANELFPDVIFVHSSFDEYVQAVEGALPEHLSTVTGELTSQETDGWYTLANTSSSRIYLKQAFQENSNLLEQVVE PLTIITGGHNHKDQLTYAWKTLLQNAPHDSICGCSVDEVHREMETRFAKVNQVGNFVKSNLLNEWKGKIATDKAQSDYLF TVINTGLHDKVDTVCTVIDVATCDFKELHPTEGYKKMAALILPSYRVEDLDGRPVEATIEDLGANFEYDLPKDKFRQARI ARQVRVTIPVHLAPLSWTTFQLLEGEQEHREGIYQNGVIDTPFVTVSVDDNITVYDKTTHEAYEDFIRFEDRGDIGNEYI YFQPKGTEPIFAELKDHEVLENTDRYAKILLKHELTVPVSADEKLEEEQQGIIEFMKREAGRSEELTNIPLETELTVFVD NPQIRFKTRFTNTAKDHRIRLLVKTHNTRPSNDSESIYEVVTRPNKPAASWENPENPQHQQAFVSLYDDEKGVTVSNKGL NEYEILGDNTIAVTILRASGELGDWGYFPTPEAQCLREFEVEFALECHQAQERFSAYRRAKALQTPFTSLQLARQEGSVV ATGSLLSHSVLSIPQVCPTAFKVAENEEGYVLRYYNMCSENVRVPESQHLFLDLLERPYPVHSGLLAPQEIRTEFIKKEE I >Mature_881_residues MENVVVHIISHSHWDREWYLPFESHRMQLVELFDNLFDLFENDPEFKSFHLDGQTIVLDDYLQIRPENRDKVQRYIDEGK LKIGPFYILQDDYLISSEANVRNTLIGQQEAAKWGKSTQIGYFPDTFGNMGQAPQILQKSGIHVAAFGRGVKPIGFDNQV LEDEQFTSQFSEMYWQGVDGSRVLGILFANWYSNGNEIPVDKDEALTFWKQKLSDVRAYASTNQWLMMNGCDHQPVQKNL SEAIRVANELFPDVIFVHSSFDEYVQAVEGALPEHLSTVTGELTSQETDGWYTLANTSSSRIYLKQAFQENSNLLEQVVE PLTIITGGHNHKDQLTYAWKTLLQNAPHDSICGCSVDEVHREMETRFAKVNQVGNFVKSNLLNEWKGKIATDKAQSDYLF TVINTGLHDKVDTVCTVIDVATCDFKELHPTEGYKKMAALILPSYRVEDLDGRPVEATIEDLGANFEYDLPKDKFRQARI ARQVRVTIPVHLAPLSWTTFQLLEGEQEHREGIYQNGVIDTPFVTVSVDDNITVYDKTTHEAYEDFIRFEDRGDIGNEYI YFQPKGTEPIFAELKDHEVLENTDRYAKILLKHELTVPVSADEKLEEEQQGIIEFMKREAGRSEELTNIPLETELTVFVD NPQIRFKTRFTNTAKDHRIRLLVKTHNTRPSNDSESIYEVVTRPNKPAASWENPENPQHQQAFVSLYDDEKGVTVSNKGL NEYEILGDNTIAVTILRASGELGDWGYFPTPEAQCLREFEVEFALECHQAQERFSAYRRAKALQTPFTSLQLARQEGSVV ATGSLLSHSVLSIPQVCPTAFKVAENEEGYVLRYYNMCSENVRVPESQHLFLDLLERPYPVHSGLLAPQEIRTEFIKKEE I
Specific function: May hydrolyze mannosyl-D-glycerate to mannose-6- phosphate and glycerate [H]
COG id: COG0383
COG function: function code G; Alpha-mannosidase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 38 family [H]
Homologues:
Organism=Escherichia coli, GI1786952, Length=877, Percent_Identity=26.2257696693273, Blast_Score=263, Evalue=2e-71,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011013 - InterPro: IPR011330 - InterPro: IPR011682 - InterPro: IPR015341 - InterPro: IPR000602 [H]
Pfam domain/function: PF09261 Alpha-mann_mid; PF01074 Glyco_hydro_38; PF07748 Glyco_hydro_38C [H]
EC number: NA
Molecular weight: Translated: 100849; Mature: 100849
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MENVVVHIISHSHWDREWYLPFESHRMQLVELFDNLFDLFENDPEFKSFHLDGQTIVLDD CCCEEEEEEECCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEC YLQIRPENRDKVQRYIDEGKLKIGPFYILQDDYLISSEANVRNTLIGQQEAAKWGKSTQI EEEECCCCHHHHHHHHHCCCEEECCEEEEECCEEECCCCCHHHHHCCCHHHHHCCCCCCC GYFPDTFGNMGQAPQILQKSGIHVAAFGRGVKPIGFDNQVLEDEQFTSQFSEMYWQGVDG CCCCCCCCCCCCCHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC SRVLGILFANWYSNGNEIPVDKDEALTFWKQKLSDVRAYASTNQWLMMNGCDHQPVQKNL CCEEEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH SEAIRVANELFPDVIFVHSSFDEYVQAVEGALPEHLSTVTGELTSQETDGWYTLANTSSS HHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEECCCCC RIYLKQAFQENSNLLEQVVEPLTIITGGHNHKDQLTYAWKTLLQNAPHDSICGCSVDEVH EEHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHH REMETRFAKVNQVGNFVKSNLLNEWKGKIATDKAQSDYLFTVINTGLHDKVDTVCTVIDV HHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEEEEECCCCCHHHHHHHHHHHH ATCDFKELHPTEGYKKMAALILPSYRVEDLDGRPVEATIEDLGANFEYDLPKDKFRQARI CCCCCHHCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHH ARQVRVTIPVHLAPLSWTTFQLLEGEQEHREGIYQNGVIDTPFVTVSVDDNITVYDKTTH HHEEEEEEEEEEECCCCHHHHHHCCCHHHHCCHHHCCCCCCCEEEEEECCCEEEEECCHH EAYEDFIRFEDRGDIGNEYIYFQPKGTEPIFAELKDHEVLENTDRYAKILLKHELTVPVS HHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHCCCCHHHHCHHHHHHHHHHHCEEECCC ADEKLEEEQQGIIEFMKREAGRSEELTNIPLETELTVFVDNPQIRFKTRFTNTAKDHRIR CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCEEE LLVKTHNTRPSNDSESIYEVVTRPNKPAASWENPENPQHQQAFVSLYDDEKGVTVSNKGL EEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHEEEECCCCCEEECCCC NEYEILGDNTIAVTILRASGELGDWGYFPTPEAQCLREFEVEFALECHQAQERFSAYRRA CCEEEECCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KALQTPFTSLQLARQEGSVVATGSLLSHSVLSIPQVCPTAFKVAENEEGYVLRYYNMCSE HHHHCCHHHHHHHHCCCCEEEECHHHHHHHHHCHHHCCHHHHCCCCCCCEEEEEEECCCC NVRVPESQHLFLDLLERPYPVHSGLLAPQEIRTEFIKKEEI CCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure MENVVVHIISHSHWDREWYLPFESHRMQLVELFDNLFDLFENDPEFKSFHLDGQTIVLDD CCCEEEEEEECCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEC YLQIRPENRDKVQRYIDEGKLKIGPFYILQDDYLISSEANVRNTLIGQQEAAKWGKSTQI EEEECCCCHHHHHHHHHCCCEEECCEEEEECCEEECCCCCHHHHHCCCHHHHHCCCCCCC GYFPDTFGNMGQAPQILQKSGIHVAAFGRGVKPIGFDNQVLEDEQFTSQFSEMYWQGVDG CCCCCCCCCCCCCHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC SRVLGILFANWYSNGNEIPVDKDEALTFWKQKLSDVRAYASTNQWLMMNGCDHQPVQKNL CCEEEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH SEAIRVANELFPDVIFVHSSFDEYVQAVEGALPEHLSTVTGELTSQETDGWYTLANTSSS HHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEECCCCC RIYLKQAFQENSNLLEQVVEPLTIITGGHNHKDQLTYAWKTLLQNAPHDSICGCSVDEVH EEHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHH REMETRFAKVNQVGNFVKSNLLNEWKGKIATDKAQSDYLFTVINTGLHDKVDTVCTVIDV HHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEEEEECCCCCHHHHHHHHHHHH ATCDFKELHPTEGYKKMAALILPSYRVEDLDGRPVEATIEDLGANFEYDLPKDKFRQARI CCCCCHHCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHH ARQVRVTIPVHLAPLSWTTFQLLEGEQEHREGIYQNGVIDTPFVTVSVDDNITVYDKTTH HHEEEEEEEEEEECCCCHHHHHHCCCHHHHCCHHHCCCCCCCEEEEEECCCEEEEECCHH EAYEDFIRFEDRGDIGNEYIYFQPKGTEPIFAELKDHEVLENTDRYAKILLKHELTVPVS HHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHCCCCHHHHCHHHHHHHHHHHCEEECCC ADEKLEEEQQGIIEFMKREAGRSEELTNIPLETELTVFVDNPQIRFKTRFTNTAKDHRIR CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCEEE LLVKTHNTRPSNDSESIYEVVTRPNKPAASWENPENPQHQQAFVSLYDDEKGVTVSNKGL EEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHEEEECCCCCEEECCCC NEYEILGDNTIAVTILRASGELGDWGYFPTPEAQCLREFEVEFALECHQAQERFSAYRRA CCEEEECCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KALQTPFTSLQLARQEGSVVATGSLLSHSVLSIPQVCPTAFKVAENEEGYVLRYYNMCSE HHHHCCHHHHHHHHCCCCEEEECHHHHHHHHHCHHHCCHHHHCCCCCCCEEEEEEECCCC NVRVPESQHLFLDLLERPYPVHSGLLAPQEIRTEFIKKEEI CCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11058132 [H]