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The map label for this gene is ywcJ [H]

Identifier: 116516152

GI number: 116516152

Start: 1101210

End: 1102007

Strand: Reverse

Name: ywcJ [H]

Synonym: SPD_1075

Alternate gene names: 116516152

Gene position: 1102007-1101210 (Counterclockwise)

Preceding gene: 116515518

Following gene: 116516884

Centisome position: 53.86

GC content: 40.73

Gene sequence:

>798_bases
ATGGTTTCTTCAGAATTTATCTCAAAGATTGAATTTGCTTGCAATAAGAAAGAAAGTCTTTATAGTCAAAGCAAATTTAA
GTATGCGATTCGTTCGATGTTCGCAGGTGCATTTTTAACCTTCAGTACTGCTGCAGGTGCAGTTGGGGCTGACTTGATTA
ATAAAATTGCACCAGGTAGTGGACGCTTCCTCTTTCCATTCGTTTTTGCTTGGGGCTTGGCCTACATTGTTTTTTTGAAT
GCCGAGTTGGTCACTTCAAACATGATGTTCTTGACTGCTGGTAGTTTCTTAAAAAAAATCTCTTGGAGAAAAACAGCTGA
GATTTTACTATACTGTACCTTGTTCAACCTTATCGGAGCCTTGATAGCAGGGTGGGGCTTTGCTCATTCGGCAGCCTATG
CGAATCTGACACACGATAGTTTCATCTCAGGTGTTGTTGAGATGAAGTTAGGCCGCTCAAATGAATTGGTCTTGCTTGAG
GCGATTTTGGCAAATATTTTCGTAAATATTGCGATTCTGTCATTTATTTTGGTCAAAGATGGTGGTGCCAAACTTTGGCT
TGTGTTGTCAGCTATTTACATGTTTGTATTCTTAACAAACGAGCACATTGCGGCGAACTTTGCTTCTTTCGCGATTGTGA
AATTCAGTGTTGCTGCGGATTCAATTGCCAACTTCGGTGTTGGAAATATGCTTCGCCACTGGGGTGTGACTTTCATCGGA
AACTTTATCGGAGGAGGCCTCTTGATGGGTCTTCCATATGCCTTCCTCAATAAAAACGAAGATACTTATGTAGATTAA

Upstream 100 bases:

>100_bases
AGTTTCAATCTACTATAAACTTTTATGAAATACAGAAAACGCTTCCTAAAACCTAAAGTTTGTGATATAATTATCAAGAA
AAAAGATTTAGGAGTTTATT

Downstream 100 bases:

>100_bases
GAAAATGAGCACGATTGAGTCGTGCTTTTTTCATTTTCAAAATAAGGTAATAGCTATTTCTTATATCAAAATATAGAAAA
CTGATATTTGTAAACTATAA

Product: transporter FNT family protein

Products: Proton [Cytoplasm]; nitrite [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MVSSEFISKIEFACNKKESLYSQSKFKYAIRSMFAGAFLTFSTAAGAVGADLINKIAPGSGRFLFPFVFAWGLAYIVFLN
AELVTSNMMFLTAGSFLKKISWRKTAEILLYCTLFNLIGALIAGWGFAHSAAYANLTHDSFISGVVEMKLGRSNELVLLE
AILANIFVNIAILSFILVKDGGAKLWLVLSAIYMFVFLTNEHIAANFASFAIVKFSVAADSIANFGVGNMLRHWGVTFIG
NFIGGGLLMGLPYAFLNKNEDTYVD

Sequences:

>Translated_265_residues
MVSSEFISKIEFACNKKESLYSQSKFKYAIRSMFAGAFLTFSTAAGAVGADLINKIAPGSGRFLFPFVFAWGLAYIVFLN
AELVTSNMMFLTAGSFLKKISWRKTAEILLYCTLFNLIGALIAGWGFAHSAAYANLTHDSFISGVVEMKLGRSNELVLLE
AILANIFVNIAILSFILVKDGGAKLWLVLSAIYMFVFLTNEHIAANFASFAIVKFSVAADSIANFGVGNMLRHWGVTFIG
NFIGGGLLMGLPYAFLNKNEDTYVD
>Mature_265_residues
MVSSEFISKIEFACNKKESLYSQSKFKYAIRSMFAGAFLTFSTAAGAVGADLINKIAPGSGRFLFPFVFAWGLAYIVFLN
AELVTSNMMFLTAGSFLKKISWRKTAEILLYCTLFNLIGALIAGWGFAHSAAYANLTHDSFISGVVEMKLGRSNELVLLE
AILANIFVNIAILSFILVKDGGAKLWLVLSAIYMFVFLTNEHIAANFASFAIVKFSVAADSIANFGVGNMLRHWGVTFIG
NFIGGGLLMGLPYAFLNKNEDTYVD

Specific function: Potential Nitrite Transporter. [C]

COG id: COG2116

COG function: function code P; Formate/nitrite family of transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FNT transporter (TC 2.A.44) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000292 [H]

Pfam domain/function: PF01226 Form_Nir_trans [H]

EC number: NA

Molecular weight: Translated: 28958; Mature: 28958

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHCCHHHHCCCCCCCCC
>Mature Secondary Structure
MVSSEFISKIEFACNKKESLYSQSKFKYAIRSMFAGAFLTFSTAAGAVGADLINKIAPGS
CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC
GRFLFPFVFAWGLAYIVFLNAELVTSNMMFLTAGSFLKKISWRKTAEILLYCTLFNLIGA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIAGWGFAHSAAYANLTHDSFISGVVEMKLGRSNELVLLEAILANIFVNIAILSFILVKD
HHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
GGAKLWLVLSAIYMFVFLTNEHIAANFASFAIVKFSVAADSIANFGVGNMLRHWGVTFIG
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
NFIGGGLLMGLPYAFLNKNEDTYVD
HHHHHHHHHHCCHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton [Periplasm]; nitrite [Periplasm] [C]

Specific reaction: Proton [Periplasm] + nitrite [Periplasm] = Proton [Cytoplasm] + nitrite [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2163394; 7934828; 9384377 [H]