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The map label for this gene is ybaK [C]

Identifier: 116516113

GI number: 116516113

Start: 885534

End: 886016

Strand: Reverse

Name: ybaK [C]

Synonym: SPD_0871

Alternate gene names: 116516113

Gene position: 886016-885534 (Counterclockwise)

Preceding gene: 116516986

Following gene: 116516753

Centisome position: 43.3

GC content: 39.54

Gene sequence:

>483_bases
ATGGCAAAAAAAGTTAAAATCAAAAAAACATTGGTGGAACAAATCCTATCTAAAGCAGCTATCCCTCATCAGGGGATTCA
AATCAATGCCCTAGAAGGAGAGCTTCCTCAAGGTTATGAACGAGATCAGATTTTCAAAACCTTGGCGCTTTTGGGAGACA
AGACCGGACCGATTATCGGAATTGTCCCTATCACTCAGCACTTGTCTGAAAAGAAACTAGCTAAAATTTCTGGCAATAAA
AAAGTGAGCATGATTCCACAAAAGGACTTAGAAAAAACAACTGGTTACATTCATGGAGCCAATAATCCTGTCGGAATTCG
TCAGAAACACAATTATCCCATTTTTATCGATAAAATTGCTCTAGATTTGGATCGAATGATTGTCTCTGCAGGCGAAGTCG
GACACAGCATTATCGTCGCGCCACAAGACTTGGCTAGCTTTGTAAAGGCAGATTTTGTAGATATTTTGGAGGACATCAAG
TAA

Upstream 100 bases:

>100_bases
CAGGACTTTCACTTGTCGGTTATGTCATCATCGCCTTCTTCTTTGCGCTGGGAATCTGGCTTGGTATTTGGATGAGTCAA
TTGGAGGATAAATATAAATA

Downstream 100 bases:

>100_bases
TGAAACTCTACTTTGTCCGCCACGGTCGTACCCTCTGGAACCAAGAAGGTCGTTTTCAAGGTGCTAGCGGTGATTCTCCT
CTTCTTCCTGAATCCATTGA

Product: regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MAKKVKIKKTLVEQILSKAAIPHQGIQINALEGELPQGYERDQIFKTLALLGDKTGPIIGIVPITQHLSEKKLAKISGNK
KVSMIPQKDLEKTTGYIHGANNPVGIRQKHNYPIFIDKIALDLDRMIVSAGEVGHSIIVAPQDLASFVKADFVDILEDIK

Sequences:

>Translated_160_residues
MAKKVKIKKTLVEQILSKAAIPHQGIQINALEGELPQGYERDQIFKTLALLGDKTGPIIGIVPITQHLSEKKLAKISGNK
KVSMIPQKDLEKTTGYIHGANNPVGIRQKHNYPIFIDKIALDLDRMIVSAGEVGHSIIVAPQDLASFVKADFVDILEDIK
>Mature_159_residues
AKKVKIKKTLVEQILSKAAIPHQGIQINALEGELPQGYERDQIFKTLALLGDKTGPIIGIVPITQHLSEKKLAKISGNKK
VSMIPQKDLEKTTGYIHGANNPVGIRQKHNYPIFIDKIALDLDRMIVSAGEVGHSIIVAPQDLASFVKADFVDILEDIK

Specific function: Affects the expression of the receptor, named binding substance, that mediates mating aggregate formation. Could be a regulatory protein that suppresses the function or expression of ebsA and/or ebsMB [H]

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=120, Percent_Identity=37.5, Blast_Score=68, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 17583; Mature: 17452

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKVKIKKTLVEQILSKAAIPHQGIQINALEGELPQGYERDQIFKTLALLGDKTGPIIG
CCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEE
IVPITQHLSEKKLAKISGNKKVSMIPQKDLEKTTGYIHGANNPVGIRQKHNYPIFIDKIA
EECCHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCEEECCCCCCCCEECCCCCEEEHHHH
LDLDRMIVSAGEVGHSIIVAPQDLASFVKADFVDILEDIK
HHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AKKVKIKKTLVEQILSKAAIPHQGIQINALEGELPQGYERDQIFKTLALLGDKTGPIIG
CCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEE
IVPITQHLSEKKLAKISGNKKVSMIPQKDLEKTTGYIHGANNPVGIRQKHNYPIFIDKIA
EECCHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCEEECCCCCCCCEECCCCCEEEHHHH
LDLDRMIVSAGEVGHSIIVAPQDLASFVKADFVDILEDIK
HHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8226689; 12663927 [H]