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The map label for this gene is araQ [H]

Identifier: 116516106

GI number: 116516106

Start: 1599681

End: 1600526

Strand: Reverse

Name: araQ [H]

Synonym: SPD_1583

Alternate gene names: 116516106

Gene position: 1600526-1599681 (Counterclockwise)

Preceding gene: 116515702

Following gene: 116517206

Centisome position: 78.22

GC content: 34.16

Gene sequence:

>846_bases
ATGAAACGATTTAAACCAACAACAATCTTAGAATATATTCTGTTAACTTTATTGGCAGGACTCTTCCTTTTTCCTATGGT
TTGGATGGTAGTTTCAGCTATGAAGCCAGAAGCGGATGTTTATAAAAATTTGACTAGTTGGCAAGCCTTCTTACCAAGTT
TAAATCCCGCTGATTGGTTTAAACCTTATCAGGAAGTATTTGAGCGCTTTAGTATTTTTACATATCTAGGGAACAGCATT
TTTTATGCTGGAACGTTTGCTATTGGTTCTATTATTGTCAATGCACTGGCCGGTTTCGCTTTTGCAAAAGTCAATTTTTC
AGGTAAGAAAATTTTATTTGGTTTCTTACTTGCTTTACTTATTATTCCAGTGGAAACTGTGTTAATTCCACAATTTACCA
TTATCAATTCCTTAGGTTTGGTCAATAATCGTCTTGCAGTTATTATTCCAGGATTGGCGAGTGTATTTAATATTTACTTA
TTTAGGAATTTCTTTATTGCAATTCCAGAAGAGATTCTTGAGTCTGCAAAGATGGACGGAGCAAGTATCGTTAGAATTTT
CTTTAGAATTATGCTTCCAATGTCTAAACCTGCAGTTGCTACAGTTGGTGTTTTATCATTTATTTCAAGCTGGAATGATT
ATATCTGGCCATTGATGGTTTTGACAGATTCTTCTAAATTTTCAATGCAGGTTGCAATTACAACTATTAATACAACTCAA
CCAGTTTATATCAATCAGGTAATGGCTGTATTAACTATTTCAACGATTCCGTTGATTTTGGTCTATGTAGTCGCTCAGAA
ATATATTGTTCAAGGTCTGGGTGGTTCCGGAACTGGAATAAAATAG

Upstream 100 bases:

>100_bases
CGTCTTGTAGGATATTCTAGCTCAATCGCTTTAGTATTTACAACGTTAATTGGTATGATTAGCTTAGTACAACGTCGCGT
TCTGAAGGAGGATGACTAAG

Downstream 100 bases:

>100_bases
GATATACTTATGATAAATAAAACATTTACAGTAGAAAAAGCCAATCGTTTTATAGCAGAAAATAAACATCTCGTTAATAC
TCAATATAAGCCTGAAGAAC

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MKRFKPTTILEYILLTLLAGLFLFPMVWMVVSAMKPEADVYKNLTSWQAFLPSLNPADWFKPYQEVFERFSIFTYLGNSI
FYAGTFAIGSIIVNALAGFAFAKVNFSGKKILFGFLLALLIIPVETVLIPQFTIINSLGLVNNRLAVIIPGLASVFNIYL
FRNFFIAIPEEILESAKMDGASIVRIFFRIMLPMSKPAVATVGVLSFISSWNDYIWPLMVLTDSSKFSMQVAITTINTTQ
PVYINQVMAVLTISTIPLILVYVVAQKYIVQGLGGSGTGIK

Sequences:

>Translated_281_residues
MKRFKPTTILEYILLTLLAGLFLFPMVWMVVSAMKPEADVYKNLTSWQAFLPSLNPADWFKPYQEVFERFSIFTYLGNSI
FYAGTFAIGSIIVNALAGFAFAKVNFSGKKILFGFLLALLIIPVETVLIPQFTIINSLGLVNNRLAVIIPGLASVFNIYL
FRNFFIAIPEEILESAKMDGASIVRIFFRIMLPMSKPAVATVGVLSFISSWNDYIWPLMVLTDSSKFSMQVAITTINTTQ
PVYINQVMAVLTISTIPLILVYVVAQKYIVQGLGGSGTGIK
>Mature_281_residues
MKRFKPTTILEYILLTLLAGLFLFPMVWMVVSAMKPEADVYKNLTSWQAFLPSLNPADWFKPYQEVFERFSIFTYLGNSI
FYAGTFAIGSIIVNALAGFAFAKVNFSGKKILFGFLLALLIIPVETVLIPQFTIINSLGLVNNRLAVIIPGLASVFNIYL
FRNFFIAIPEEILESAKMDGASIVRIFFRIMLPMSKPAVATVGVLSFISSWNDYIWPLMVLTDSSKFSMQVAITTINTTQ
PVYINQVMAVLTISTIPLILVYVVAQKYIVQGLGGSGTGIK

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=204, Percent_Identity=32.843137254902, Blast_Score=117, Evalue=6e-28,
Organism=Escherichia coli, GI1787571, Length=272, Percent_Identity=25.3676470588235, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1790464, Length=215, Percent_Identity=26.5116279069767, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31260; Mature: 31260

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRFKPTTILEYILLTLLAGLFLFPMVWMVVSAMKPEADVYKNLTSWQAFLPSLNPADWF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHH
KPYQEVFERFSIFTYLGNSIFYAGTFAIGSIIVNALAGFAFAKVNFSGKKILFGFLLALL
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHH
IIPVETVLIPQFTIINSLGLVNNRLAVIIPGLASVFNIYLFRNFFIAIPEEILESAKMDG
HHHHHHHHHCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHCCCH
ASIVRIFFRIMLPMSKPAVATVGVLSFISSWNDYIWPLMVLTDSSKFSMQVAITTINTTQ
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHEEEEEEECCCCEEEEEEEEEECCCC
PVYINQVMAVLTISTIPLILVYVVAQKYIVQGLGGSGTGIK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKRFKPTTILEYILLTLLAGLFLFPMVWMVVSAMKPEADVYKNLTSWQAFLPSLNPADWF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHH
KPYQEVFERFSIFTYLGNSIFYAGTFAIGSIIVNALAGFAFAKVNFSGKKILFGFLLALL
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHH
IIPVETVLIPQFTIINSLGLVNNRLAVIIPGLASVFNIYLFRNFFIAIPEEILESAKMDG
HHHHHHHHHCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHCCCH
ASIVRIFFRIMLPMSKPAVATVGVLSFISSWNDYIWPLMVLTDSSKFSMQVAITTINTTQ
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHEEEEEEECCCCEEEEEEEEEECCCC
PVYINQVMAVLTISTIPLILVYVVAQKYIVQGLGGSGTGIK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]