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The map label for this gene is ydcI [H]

Identifier: 116516081

GI number: 116516081

Start: 817281

End: 819410

Strand: Direct

Name: ydcI [H]

Synonym: SPD_0802

Alternate gene names: 116516081

Gene position: 817281-819410 (Clockwise)

Preceding gene: 116517174

Following gene: 116516907

Centisome position: 39.94

GC content: 43.24

Gene sequence:

>2130_bases
ATGGATAAAAAATATGAAAAAATCTCTCAGGATTTGGGAGTGACGTTAAAGCAAATTGATACCGTTCTAAGTTTGACAGC
TGAAGGGGCGACTATTCCCTTTATCGCGCGTTATCGCAAGGACATGACTGGTAGTCTGGATGAGGTGGCGATTAAGGCTA
TTATTGATTTGGATAAAAGTCTGACAAATCTCAATGACCGTAAGGAAGCTGTCTTAGCTAAGATTCAAGAACAAGGTAAG
TTGACCAAGGAATTGGAAGAAGCTATCTTAGTTGCCGAAAAATTAGCAGACGTTGAAGAACTCTATCTTCCTTATAAGGA
AAAGCGTCGTACCAAGGCAACCATTGCCCGTGAAGCTGGACTCTTTCCTCTTGCTCGTTTGATTTTGCAGAATATAGTTG
ACTTAGAGAAAGAAGCTGAAAAGTTCGTCTGTGAAGGATTTGCGACTGGCAAGGAAGCCTTGACCGGTGCAGTTGATATT
TTGGTCGAAGCCTTATCGGAAGATGTGACCTTGCGTTCTATGACTTATCAGGAAGTGCTGAGACACTCTAAACTCACTTC
TCAAGCCAAGGATGAAAGTCTTGATGAAAAGCAGGTTTTTCAGATTTATTATGATTTTTCAGAGACAGTTGGAACTATGC
AAGGCTATCGTACCTTGGCTCTCAATCGTGGGGAGAAACTTGGTGTCTTGAAGATCGGTTTTGAACATGCGACGGACCGT
ATTCTTGCCTTCTTTGCTACTCGTTTCAAGGTGAAAAATGCTTATATTGATGAAGTTGTTCAGCAATCCGTTAAGAAAAA
GGTCTTGCCTGCTATTGAGCGTCGTATTCGGACAGAATTAACTGAGAAAGCTGAAGAGGGAGCTATCCAACTTTTTTCTG
ACAATCTGCGCAATCTCCTCTTGGTTGCTCCACTGAAAGGGCGCGTGGTTCTTGGATTTGACCCAGCCTTTCGTACAGGT
GCCAAGTTAGCTGTCGTGGATGCAACAGGAAAAATGCTGACAACTCAGGTTATTTATCCTGTTAAACCAGCATCAGCTCG
TCAAATCGAAGAAGCCAAGAAAGATTTAGCAGATTTAATTGGTCAATACGGTGTAGAGATTATTGCCATTGGAAATGGAA
CGGCCAGTCGTGAAAGTGAAGCTTTTGTAGCGGAAGTTCTGAAAGATTTCCCTGAAGTCAGCTATGTTATCGTTAATGAA
AGTGGTGCTTCTGTCTATTCTGCCAGCGAACTTGCTCGTCAGGAGTTTCCAGACTTGACCGTTGAAAAACGCTCTGCCAT
TTCTATCGCCCGTCGTTTGCAAGATCCTCTTGCGGAATTGGTCAAAATCGATCCTAAGTCAATTGGTGTCGGTCAATACC
AACACGATGTCAGTCAGAAGAAACTATCTGAGAGTCTGGACTTTGTTGTCGATACAGTGGTTAACCAAGTTGGTGTCAAT
GTCAATACAGCTAGCCCAGCTCTTCTTTCACACGTAGCTGGACTCAACAAAACTATCTCTGAAAATATTGTCAAATACCG
CGAGGAAGAAGGAAAAATCACTTCACGCGCCCAAATCAAGAAAGTTCCTCGTCTGGGAGCCAAGGCCTTTGAGCAGGCTG
CTGGTTTCCTTCGTATCCCTGAAAGTAGCAATATCCTTGATAATACAGGAGTTCACCCAGAGAATTACACTGCAGTTAAG
GAACTCTTCAAACGTTTAGATATTAAAGACCTAAACGAAGAAGCCCAAAGCAAACTCAAGTCCCTTTCAGTCAAGGAAAT
GGCTCAAGAGCTAGACCTCGGTCCAGAAACCCTTAAAGATATCATTGCAGATCTTCTCAAACCAGGTCGAGATTTCCGTG
ATTCCTTTGACGCACCTGTGCTTCGCCAAGATGTCCTAGATATCAAAGACCTAGTGGTAGGTCAGAAGCTAGAAGGTGTT
GTGCGTAACGTTGTTGACTTCGGTGCCTTCGTTGATATCGGGATTCACGAGGACGGCTTGATTCATATTTCTCATATGAG
TCGCAAGTTTATCAAACACCCTAGTCAAGTGGTGTCAGTTGGAGATTTGGTGACCGTTTGGGTCAAGAAAATTGATACTG
AACGTGAAAAAGTTAATCTGTCGCTCCTCGCTCCAAATGAAACTGACTGA

Upstream 100 bases:

>100_bases
TGCAAGTTATTGCGCTGTAGCATATAAATCTATTTCCTACATATTTTTTAAACGTTCTACGAGTTAATTTGAAACGTTTA
GCTTGTGGTATAATAGATTT

Downstream 100 bases:

>100_bases
TTATGTCAAGCAGGTTTCACTAGAAGACTTCGGGAGAGCTTTTATCCATCATGTCCAGTGGAATAGGCGTCTACGTTCGA
CAGGTGGGCGATTTTTCCCC

Product: S1 RNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 709; Mature: 709

Protein sequence:

>709_residues
MDKKYEKISQDLGVTLKQIDTVLSLTAEGATIPFIARYRKDMTGSLDEVAIKAIIDLDKSLTNLNDRKEAVLAKIQEQGK
LTKELEEAILVAEKLADVEELYLPYKEKRRTKATIAREAGLFPLARLILQNIVDLEKEAEKFVCEGFATGKEALTGAVDI
LVEALSEDVTLRSMTYQEVLRHSKLTSQAKDESLDEKQVFQIYYDFSETVGTMQGYRTLALNRGEKLGVLKIGFEHATDR
ILAFFATRFKVKNAYIDEVVQQSVKKKVLPAIERRIRTELTEKAEEGAIQLFSDNLRNLLLVAPLKGRVVLGFDPAFRTG
AKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDLADLIGQYGVEIIAIGNGTASRESEAFVAEVLKDFPEVSYVIVNE
SGASVYSASELARQEFPDLTVEKRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDVSQKKLSESLDFVVDTVVNQVGVN
VNTASPALLSHVAGLNKTISENIVKYREEEGKITSRAQIKKVPRLGAKAFEQAAGFLRIPESSNILDNTGVHPENYTAVK
ELFKRLDIKDLNEEAQSKLKSLSVKEMAQELDLGPETLKDIIADLLKPGRDFRDSFDAPVLRQDVLDIKDLVVGQKLEGV
VRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKIDTEREKVNLSLLAPNETD

Sequences:

>Translated_709_residues
MDKKYEKISQDLGVTLKQIDTVLSLTAEGATIPFIARYRKDMTGSLDEVAIKAIIDLDKSLTNLNDRKEAVLAKIQEQGK
LTKELEEAILVAEKLADVEELYLPYKEKRRTKATIAREAGLFPLARLILQNIVDLEKEAEKFVCEGFATGKEALTGAVDI
LVEALSEDVTLRSMTYQEVLRHSKLTSQAKDESLDEKQVFQIYYDFSETVGTMQGYRTLALNRGEKLGVLKIGFEHATDR
ILAFFATRFKVKNAYIDEVVQQSVKKKVLPAIERRIRTELTEKAEEGAIQLFSDNLRNLLLVAPLKGRVVLGFDPAFRTG
AKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDLADLIGQYGVEIIAIGNGTASRESEAFVAEVLKDFPEVSYVIVNE
SGASVYSASELARQEFPDLTVEKRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDVSQKKLSESLDFVVDTVVNQVGVN
VNTASPALLSHVAGLNKTISENIVKYREEEGKITSRAQIKKVPRLGAKAFEQAAGFLRIPESSNILDNTGVHPENYTAVK
ELFKRLDIKDLNEEAQSKLKSLSVKEMAQELDLGPETLKDIIADLLKPGRDFRDSFDAPVLRQDVLDIKDLVVGQKLEGV
VRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKIDTEREKVNLSLLAPNETD
>Mature_709_residues
MDKKYEKISQDLGVTLKQIDTVLSLTAEGATIPFIARYRKDMTGSLDEVAIKAIIDLDKSLTNLNDRKEAVLAKIQEQGK
LTKELEEAILVAEKLADVEELYLPYKEKRRTKATIAREAGLFPLARLILQNIVDLEKEAEKFVCEGFATGKEALTGAVDI
LVEALSEDVTLRSMTYQEVLRHSKLTSQAKDESLDEKQVFQIYYDFSETVGTMQGYRTLALNRGEKLGVLKIGFEHATDR
ILAFFATRFKVKNAYIDEVVQQSVKKKVLPAIERRIRTELTEKAEEGAIQLFSDNLRNLLLVAPLKGRVVLGFDPAFRTG
AKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDLADLIGQYGVEIIAIGNGTASRESEAFVAEVLKDFPEVSYVIVNE
SGASVYSASELARQEFPDLTVEKRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDVSQKKLSESLDFVVDTVVNQVGVN
VNTASPALLSHVAGLNKTISENIVKYREEEGKITSRAQIKKVPRLGAKAFEQAAGFLRIPESSNILDNTGVHPENYTAVK
ELFKRLDIKDLNEEAQSKLKSLSVKEMAQELDLGPETLKDIIADLLKPGRDFRDSFDAPVLRQDVLDIKDLVVGQKLEGV
VRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKIDTEREKVNLSLLAPNETD

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=771, Percent_Identity=32.5551232166018, Blast_Score=371, Evalue=1e-102,
Organism=Homo sapiens, GI27597090, Length=719, Percent_Identity=22.1140472878999, Blast_Score=90, Evalue=9e-18,
Organism=Escherichia coli, GI87082262, Length=727, Percent_Identity=44.5667125171939, Blast_Score=546, Evalue=1e-156,
Organism=Escherichia coli, GI1787140, Length=75, Percent_Identity=49.3333333333333, Blast_Score=78, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17511129, Length=743, Percent_Identity=31.0901749663526, Blast_Score=275, Evalue=8e-74,
Organism=Caenorhabditis elegans, GI17552892, Length=348, Percent_Identity=27.5862068965517, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI62484314, Length=757, Percent_Identity=34.2140026420079, Blast_Score=382, Evalue=1e-106,
Organism=Drosophila melanogaster, GI24640080, Length=585, Percent_Identity=23.2478632478632, Blast_Score=102, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 78745; Mature: 78745

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: PS50126 S1 ; PS00283 SOYBEAN_KUNITZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKKYEKISQDLGVTLKQIDTVLSLTAEGATIPFIARYRKDMTGSLDEVAIKAIIDLDKS
CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LTNLNDRKEAVLAKIQEQGKLTKELEEAILVAEKLADVEELYLPYKEKRRTKATIAREAG
HHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
LFPLARLILQNIVDLEKEAEKFVCEGFATGKEALTGAVDILVEALSEDVTLRSMTYQEVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
RHSKLTSQAKDESLDEKQVFQIYYDFSETVGTMQGYRTLALNRGEKLGVLKIGFEHATDR
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEEECHHHHHHH
ILAFFATRFKVKNAYIDEVVQQSVKKKVLPAIERRIRTELTEKAEEGAIQLFSDNLRNLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
LVAPLKGRVVLGFDPAFRTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDLADLI
EEECCCCCEEEECCHHHHCCCEEEEEECCCCEEEHEEEECCCCCCHHHHHHHHHHHHHHH
GQYGVEIIAIGNGTASRESEAFVAEVLKDFPEVSYVIVNESGASVYSASELARQEFPDLT
HHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCC
VEKRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDVSQKKLSESLDFVVDTVVNQVGVN
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
VNTASPALLSHVAGLNKTISENIVKYREEEGKITSRAQIKKVPRLGAKAFEQAAGFLRIP
CCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHCCCEEECC
ESSNILDNTGVHPENYTAVKELFKRLDIKDLNEEAQSKLKSLSVKEMAQELDLGPETLKD
CCCCCCCCCCCCCCCCHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
IIADLLKPGRDFRDSFDAPVLRQDVLDIKDLVVGQKLEGVVRNVVDFGAFVDIGIHEDGL
HHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCE
IHISHMSRKFIKHPSQVVSVGDLVTVWVKKIDTEREKVNLSLLAPNETD
EEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHEEEEEECCCCCC
>Mature Secondary Structure
MDKKYEKISQDLGVTLKQIDTVLSLTAEGATIPFIARYRKDMTGSLDEVAIKAIIDLDKS
CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LTNLNDRKEAVLAKIQEQGKLTKELEEAILVAEKLADVEELYLPYKEKRRTKATIAREAG
HHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
LFPLARLILQNIVDLEKEAEKFVCEGFATGKEALTGAVDILVEALSEDVTLRSMTYQEVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
RHSKLTSQAKDESLDEKQVFQIYYDFSETVGTMQGYRTLALNRGEKLGVLKIGFEHATDR
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEEECHHHHHHH
ILAFFATRFKVKNAYIDEVVQQSVKKKVLPAIERRIRTELTEKAEEGAIQLFSDNLRNLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
LVAPLKGRVVLGFDPAFRTGAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDLADLI
EEECCCCCEEEECCHHHHCCCEEEEEECCCCEEEHEEEECCCCCCHHHHHHHHHHHHHHH
GQYGVEIIAIGNGTASRESEAFVAEVLKDFPEVSYVIVNESGASVYSASELARQEFPDLT
HHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCC
VEKRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDVSQKKLSESLDFVVDTVVNQVGVN
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
VNTASPALLSHVAGLNKTISENIVKYREEEGKITSRAQIKKVPRLGAKAFEQAAGFLRIP
CCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHCCCEEECC
ESSNILDNTGVHPENYTAVKELFKRLDIKDLNEEAQSKLKSLSVKEMAQELDLGPETLKD
CCCCCCCCCCCCCCCCHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
IIADLLKPGRDFRDSFDAPVLRQDVLDIKDLVVGQKLEGVVRNVVDFGAFVDIGIHEDGL
HHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCE
IHISHMSRKFIKHPSQVVSVGDLVTVWVKKIDTEREKVNLSLLAPNETD
EEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]