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The map label for this gene is yoeB [H]

Identifier: 116515838

GI number: 116515838

Start: 1573981

End: 1574235

Strand: Reverse

Name: yoeB [H]

Synonym: SPD_1550

Alternate gene names: 116515838

Gene position: 1574235-1573981 (Counterclockwise)

Preceding gene: 116516949

Following gene: 116516869

Centisome position: 76.94

GC content: 37.25

Gene sequence:

>255_bases
ATGCTACTCAAGTTTACAGAAGATGCCTGGGCAGATTATTGCTACTGGCAAAACCAAGATAAAAAAACACTAAAAAGAAT
CAATAAATTAATCAAGGATATTCAACGCGATCCATTTACAGGAATAGGAAAACCAGAGCCACTCAAATATGATTACCAAG
GAGCCTGGTCACGGCGTATTGATGCAGAAAATCGCTTGATTTATATGATGGATGGAGATAGCGTGGCTTTCTTGTCCTTT
AAAGATCATTACTAA

Upstream 100 bases:

>100_bases
GAGAATCGCCCAAAATAAGGAGTTATCAGACAAGGTTTTACGAGGAATGGCTCAAGTCCGTGCTGGAAGCACTCAGGTCC
ATGTGATTGAGGAGTGATGA

Downstream 100 bases:

>100_bases
GTCTACTGTAAAGTAGGCTTTTTCTCAAGTCTCTACTAAACTACTATTTCTAAACAACAAGTTTATTTTTGCAAATGTGT
TCCAAATTCCCCAAAACATA

Product: hypothetical protein

Products: NA

Alternate protein names: Endoribonuclease YoeB; Putative mRNA interferase YoeB [H]

Number of amino acids: Translated: 84; Mature: 84

Protein sequence:

>84_residues
MLLKFTEDAWADYCYWQNQDKKTLKRINKLIKDIQRDPFTGIGKPEPLKYDYQGAWSRRIDAENRLIYMMDGDSVAFLSF
KDHY

Sequences:

>Translated_84_residues
MLLKFTEDAWADYCYWQNQDKKTLKRINKLIKDIQRDPFTGIGKPEPLKYDYQGAWSRRIDAENRLIYMMDGDSVAFLSF
KDHY
>Mature_84_residues
MLLKFTEDAWADYCYWQNQDKKTLKRINKLIKDIQRDPFTGIGKPEPLKYDYQGAWSRRIDAENRLIYMMDGDSVAFLSF
KDHY

Specific function: Part of a toxin-antitoxin (TA) module. Has RNase activity and preferentially cleaves at the 3'-end of purine ribonucleotides [H]

COG id: COG4115

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YoeB family [H]

Homologues:

Organism=Escherichia coli, GI87082025, Length=84, Percent_Identity=51.1904761904762, Blast_Score=97, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10116; Mature: 10116

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLKFTEDAWADYCYWQNQDKKTLKRINKLIKDIQRDPFTGIGKPEPLKYDYQGAWSRRI
CEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCC
DAENRLIYMMDGDSVAFLSFKDHY
CCCCCEEEEECCCCEEEEEECCCC
>Mature Secondary Structure
MLLKFTEDAWADYCYWQNQDKKTLKRINKLIKDIQRDPFTGIGKPEPLKYDYQGAWSRRI
CEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCC
DAENRLIYMMDGDSVAFLSFKDHY
CCCCCEEEEECCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]