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The map label for this gene is ssb2 [H]

Identifier: 116515814

GI number: 116515814

Start: 1712012

End: 1712407

Strand: Reverse

Name: ssb2 [H]

Synonym: SPD_1711

Alternate gene names: 116515814

Gene position: 1712407-1712012 (Counterclockwise)

Preceding gene: 116516362

Following gene: 116516929

Centisome position: 83.69

GC content: 42.93

Gene sequence:

>396_bases
ATGTATAATAAAGTTATCATGATTGGGCGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCGGTAGC
GCGAGCAACTATCGCTGTCAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTTAATATGGTTCTAT
GGGGCAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGTCAGATGAATTATGTAACCGAAGTCCTTGTGACAGGATTCCAACTCTTGGAAAGTCGTGCCCA
ACGTGCTATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Upstream 100 bases:

>100_bases
GTTTCATGATTCATAAAAAATAAGAAATTTCCTCGAAAAGTTACAAATTTCTGTAACTTTTTTTGATTTCCTACGAATAG
ATAAGTAGGAGGAAGAAAAT

Downstream 100 bases:

>100_bases
GAATTAAAAAGTCTGAGTTGGTCTCAGGCTTTTTATCTTGAGAAAGTCAGACTTTTTTCTTGACTATTTCTGACCAAGTG
ATACAATAGAATTATGAATT

Product: single-stranded DNA-binding protein

Products: NA

Alternate protein names: SSB 2; Helix-destabilizing protein 2 [H]

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Sequences:

>Translated_131_residues
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF
>Mature_131_residues
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Escherichia coli, GI1790494, Length=98, Percent_Identity=38.7755102040816, Blast_Score=70, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 14926; Mature: 14926

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAET
CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
LASYATKGSLISVDGELRTRRFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLA
HHHHHCCCCEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
DLVLEEEELPF
HHHHHHCCCCC
>Mature Secondary Structure
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAET
CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
LASYATKGSLISVDGELRTRRFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLA
HHHHHCCCCEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
DLVLEEEELPF
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12354221 [H]