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The map label for this gene is yurN [H]

Identifier: 116515702

GI number: 116515702

Start: 1600528

End: 1601430

Strand: Reverse

Name: yurN [H]

Synonym: SPD_1584

Alternate gene names: 116515702

Gene position: 1601430-1600528 (Counterclockwise)

Preceding gene: 116516945

Following gene: 116516106

Centisome position: 78.27

GC content: 33.33

Gene sequence:

>903_bases
ATGAGTAAAGAAACTGTTGTGGATACAAAAAGACGTGAAAAAATAAAGGATAACATATTAGGTTATAGTTTTTTAGCTCC
AGCTTTAATTTTATTAGGTATCTTTTTAGTAATTCCAGTTGGAATGGTCATTTATTACGCTTTTACAGATTATTATTTGT
TGACACCAGATGAAAGAAAATTTGTTGGACTTGAAAATTTTATTCGATTAACAAAAGATCCGATTTTCTTAAAGAGCTTC
TTGAATACTTTGAAATTTGTTGTTTGGATTATTCCAGTTCAATTGGGAGCGGCCTTAGGAATGGCTTTGATTGTCAATAA
AAAGCGAAAAGGAAATATGTTTTTTAAAGTGGCTTTTTTTGCTCCAGTTGTCATGTCCTTGGTAGTTATTTCTATTCTTT
GGCTTTATCTTTTAAATCCAAATAGTGGCTTATTAAATGCTATTTTAAATAAGGTAGGTATTGCTTCTCAACCTTTCTTG
ACTAGTCCTAAACAAGCTATGTATGCAATTGTTTTTGTTTCTGCTTGGCAGGGTGCAGGTTATCAGATGCTTTTATTTTT
AGGAGGAATGCAGAATATTCCACAAGATGTCTATGAAGCTGCTGAATTAGATGGATTCTCAAAATGGGCTCAGTTTCGTT
ATATCACGATGCCCCTACTAAAACCAACAGCCCTGTTTGTATTGTTAACAACTTTAATTTCTGCTTTTAAGCTGATTGTA
CAACCAATGGTTATGACGCAAGGTGGGCCATTAAACTCAACAATTACTATGGTGTACTATATTTATCAACAAGGTTTTAC
TGATCGTCTTGTAGGATATTCTAGCTCAATCGCTTTAGTATTTACAACGTTAATTGGTATGATTAGCTTAGTACAACGTC
GCGTTCTGAAGGAGGATGACTAA

Upstream 100 bases:

>100_bases
AATAATCTGTAAAAAAGAAGGTGGAAGGAAAATGTTTGGAACTACCTTCCCCTTTCTTGTTAATAGCCTAGTTTGATATA
TATGATTAAAGGAGATGGAT

Downstream 100 bases:

>100_bases
GATGAAACGATTTAAACCAACAACAATCTTAGAATATATTCTGTTAACTTTATTGGCAGGACTCTTCCTTTTTCCTATGG
TTTGGATGGTAGTTTCAGCT

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MSKETVVDTKRREKIKDNILGYSFLAPALILLGIFLVIPVGMVIYYAFTDYYLLTPDERKFVGLENFIRLTKDPIFLKSF
LNTLKFVVWIIPVQLGAALGMALIVNKKRKGNMFFKVAFFAPVVMSLVVISILWLYLLNPNSGLLNAILNKVGIASQPFL
TSPKQAMYAIVFVSAWQGAGYQMLLFLGGMQNIPQDVYEAAELDGFSKWAQFRYITMPLLKPTALFVLLTTLISAFKLIV
QPMVMTQGGPLNSTITMVYYIYQQGFTDRLVGYSSSIALVFTTLIGMISLVQRRVLKEDD

Sequences:

>Translated_300_residues
MSKETVVDTKRREKIKDNILGYSFLAPALILLGIFLVIPVGMVIYYAFTDYYLLTPDERKFVGLENFIRLTKDPIFLKSF
LNTLKFVVWIIPVQLGAALGMALIVNKKRKGNMFFKVAFFAPVVMSLVVISILWLYLLNPNSGLLNAILNKVGIASQPFL
TSPKQAMYAIVFVSAWQGAGYQMLLFLGGMQNIPQDVYEAAELDGFSKWAQFRYITMPLLKPTALFVLLTTLISAFKLIV
QPMVMTQGGPLNSTITMVYYIYQQGFTDRLVGYSSSIALVFTTLIGMISLVQRRVLKEDD
>Mature_299_residues
SKETVVDTKRREKIKDNILGYSFLAPALILLGIFLVIPVGMVIYYAFTDYYLLTPDERKFVGLENFIRLTKDPIFLKSFL
NTLKFVVWIIPVQLGAALGMALIVNKKRKGNMFFKVAFFAPVVMSLVVISILWLYLLNPNSGLLNAILNKVGIASQPFLT
SPKQAMYAIVFVSAWQGAGYQMLLFLGGMQNIPQDVYEAAELDGFSKWAQFRYITMPLLKPTALFVLLTTLISAFKLIVQ
PMVMTQGGPLNSTITMVYYIYQQGFTDRLVGYSSSIALVFTTLIGMISLVQRRVLKEDD

Specific function: Probably part of the binding-protein-dependent transport system yurMNO. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789861, Length=296, Percent_Identity=31.4189189189189, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI1787570, Length=251, Percent_Identity=25.0996015936255, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1790465, Length=230, Percent_Identity=27.8260869565217, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33768; Mature: 33637

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKETVVDTKRREKIKDNILGYSFLAPALILLGIFLVIPVGMVIYYAFTDYYLLTPDERK
CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCC
FVGLENFIRLTKDPIFLKSFLNTLKFVVWIIPVQLGAALGMALIVNKKRKGNMFFKVAFF
CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEHHHHH
APVVMSLVVISILWLYLLNPNSGLLNAILNKVGIASQPFLTSPKQAMYAIVFVSAWQGAG
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHEECCCCCC
YQMLLFLGGMQNIPQDVYEAAELDGFSKWAQFRYITMPLLKPTALFVLLTTLISAFKLIV
HHHHHHHCCHHCCCHHHHHHHHCCCHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHH
QPMVMTQGGPLNSTITMVYYIYQQGFTDRLVGYSSSIALVFTTLIGMISLVQRRVLKEDD
HHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SKETVVDTKRREKIKDNILGYSFLAPALILLGIFLVIPVGMVIYYAFTDYYLLTPDERK
CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCC
FVGLENFIRLTKDPIFLKSFLNTLKFVVWIIPVQLGAALGMALIVNKKRKGNMFFKVAFF
CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEHHHHH
APVVMSLVVISILWLYLLNPNSGLLNAILNKVGIASQPFLTSPKQAMYAIVFVSAWQGAG
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHEECCCCCC
YQMLLFLGGMQNIPQDVYEAAELDGFSKWAQFRYITMPLLKPTALFVLLTTLISAFKLIV
HHHHHHHCCHHCCCHHHHHHHHCCCHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHH
QPMVMTQGGPLNSTITMVYYIYQQGFTDRLVGYSSSIALVFTTLIGMISLVQRRVLKEDD
HHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]