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The map label for this gene is ydeD [H]

Identifier: 116515670

GI number: 116515670

Start: 1892592

End: 1893503

Strand: Reverse

Name: ydeD [H]

Synonym: SPD_1924

Alternate gene names: 116515670

Gene position: 1893503-1892592 (Counterclockwise)

Preceding gene: 116516492

Following gene: 116516648

Centisome position: 92.54

GC content: 40.35

Gene sequence:

>912_bases
ATGAATCAGTATCAGAAAAAGATTGTTAACGGAAAAATTTATTCGCTCCTATCCGGCTTAATATGGGGAATCTGTGGAAT
TTTAGGAGAGTACTTCTTTACTCATTATCAGGTGTCTTCGGGCTGGATTACCTCTATGCGTTTGACACTGGCAGGGAGTC
TTGTACTCATTTGGTCTGCAATACAATTAAAATCGCAAGTGCTAGATATTTGGCGAGACAAGAAAAATTACCTGCCCTTT
TTAGCCTATGCTATTTTGGGGATTTTTTCAGTTCAGTATTTTTTCTATCTCTGTGTAGAATACTCAAATGCTACGACAGC
AACTATTTTACAGTTTATTAGCCCTGTCTTTATCCTCTTTTACAATCGCTTGGTTTATCAAAAACGAGCGTCAAAAAGCG
CTGTTTTCTATGTTTTGGTTGCCATGCTGGGTGTTTGCTTGATGGCGACAAAGGGAGACCTCTCTCAGTTATCCATGACG
CCGCTAGCTCTTATAACAGGTTTGCTGAGTGCCATGGGTGTTATGTTTAATGTTATCTTGCCCCAACCTTTTGCTAAGCG
TTATGGTTTTGTTCCTACGGTTGGGTGGGGGATGATTTTGGCAGGTTTGTTTAGCAATGTCCTCTCGCCGGTTTATCAGC
TTTCCTTTACTCTTGATATTTGGAGTATCTTGATTTGCCTCATTATCGCTTTCTTTGGAACGGCTTTTGCTTTTTTCATT
TCCATGAAGGCTGTGTCCTTGGTTTCTCCTTTGGTGGTTGCCGTTATCAGTGCCAGTGAACCTCTCTCTTCTGCTCTCTT
GAGTGTTTTGTTCTTAGGATTAGTAGTGGATTGGTCCCTCCTTCTAGCTATAGCCTTGATTATTTTACCCATGATATTTT
TGTCTATAGAAGAAGCGAAAGAAAGTAGATAA

Upstream 100 bases:

>100_bases
ACTACACGACCTTCTTCTTCAAGGGCGAGACGATAATTCTCTAAATGAAGTGGCCAATCAATGGATTGCCACTTTTTTCT
TTTCGTGTTACAATAAGGGT

Downstream 100 bases:

>100_bases
AAAGTCTTTTCTTAATTCTAAAAGTGTGCTATACTGGAATAGTCAATAAAACACGGGGAGATAGTTGTGAAGAGTGTTTT
TAGGTTGTATCGGTAGGGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MNQYQKKIVNGKIYSLLSGLIWGICGILGEYFFTHYQVSSGWITSMRLTLAGSLVLIWSAIQLKSQVLDIWRDKKNYLPF
LAYAILGIFSVQYFFYLCVEYSNATTATILQFISPVFILFYNRLVYQKRASKSAVFYVLVAMLGVCLMATKGDLSQLSMT
PLALITGLLSAMGVMFNVILPQPFAKRYGFVPTVGWGMILAGLFSNVLSPVYQLSFTLDIWSILICLIIAFFGTAFAFFI
SMKAVSLVSPLVVAVISASEPLSSALLSVLFLGLVVDWSLLLAIALIILPMIFLSIEEAKESR

Sequences:

>Translated_303_residues
MNQYQKKIVNGKIYSLLSGLIWGICGILGEYFFTHYQVSSGWITSMRLTLAGSLVLIWSAIQLKSQVLDIWRDKKNYLPF
LAYAILGIFSVQYFFYLCVEYSNATTATILQFISPVFILFYNRLVYQKRASKSAVFYVLVAMLGVCLMATKGDLSQLSMT
PLALITGLLSAMGVMFNVILPQPFAKRYGFVPTVGWGMILAGLFSNVLSPVYQLSFTLDIWSILICLIIAFFGTAFAFFI
SMKAVSLVSPLVVAVISASEPLSSALLSVLFLGLVVDWSLLLAIALIILPMIFLSIEEAKESR
>Mature_303_residues
MNQYQKKIVNGKIYSLLSGLIWGICGILGEYFFTHYQVSSGWITSMRLTLAGSLVLIWSAIQLKSQVLDIWRDKKNYLPF
LAYAILGIFSVQYFFYLCVEYSNATTATILQFISPVFILFYNRLVYQKRASKSAVFYVLVAMLGVCLMATKGDLSQLSMT
PLALITGLLSAMGVMFNVILPQPFAKRYGFVPTVGWGMILAGLFSNVLSPVYQLSFTLDIWSILICLIIAFFGTAFAFFI
SMKAVSLVSPLVVAVISASEPLSSALLSVLFLGLVVDWSLLLAIALIILPMIFLSIEEAKESR

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

Organism=Escherichia coli, GI1790092, Length=311, Percent_Identity=32.7974276527331, Blast_Score=134, Evalue=8e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 33647; Mature: 33647

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCC
>Mature Secondary Structure
MNQYQKKIVNGKIYSLLSGLIWGICGILGEYFFTHYQVSSGWITSMRLTLAGSLVLIWSA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
IQLKSQVLDIWRDKKNYLPFLAYAILGIFSVQYFFYLCVEYSNATTATILQFISPVFILF
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
YNRLVYQKRASKSAVFYVLVAMLGVCLMATKGDLSQLSMTPLALITGLLSAMGVMFNVIL
HHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHC
PQPFAKRYGFVPTVGWGMILAGLFSNVLSPVYQLSFTLDIWSILICLIIAFFGTAFAFFI
CCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SMKAVSLVSPLVVAVISASEPLSSALLSVLFLGLVVDWSLLLAIALIILPMIFLSIEEAK
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ESR
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]