Click here to switch to the map view.

The map label for this gene is 116515603

Identifier: 116515603

GI number: 116515603

Start: 694305

End: 694544

Strand: Direct

Name: 116515603

Synonym: SPD_0675

Alternate gene names: NA

Gene position: 694305-694544 (Clockwise)

Preceding gene: 116516029

Following gene: 116516691

Centisome position: 33.93

GC content: 36.25

Gene sequence:

>240_bases
ATGGATACGATTGAAAATCTCATTATTGCGATTGTGAAACCCTTAATTTCACAACCAGATGCCTTAACTATCAAGATTGA
GGATACACCAGAATTTTTGGAATATCATTTGAATCTTGATCAAAGCGATGTGGGTCGTGTAATCGGTCGTAAGGGTCGCA
CTATTTCTGCGATAAGAACGATTGTCTACTCTGTCCCAACTGAATACAAAAAAGTAAGAATCGTTATTGACGAAAAATAA

Upstream 100 bases:

>100_bases
CAACCTTCAGACACAGTACGTAACATCCTTTCAAAAGAAGGCGTATTGAAAAAATTCCACGATTCTAAATTTTCAAAATA
AGTTTAAAGTAGGTTGACAG

Downstream 100 bases:

>100_bases
GAAGGGCGGGACGGATGTCTCGCTTTTTTGTGTGGAATAGAAGATATAGTAAAATGAAACAAGAACAGGAGAAATCGATC
AGGACAGTCAAATCGATTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 79; Mature: 79

Protein sequence:

>79_residues
MDTIENLIIAIVKPLISQPDALTIKIEDTPEFLEYHLNLDQSDVGRVIGRKGRTISAIRTIVYSVPTEYKKVRIVIDEK

Sequences:

>Translated_79_residues
MDTIENLIIAIVKPLISQPDALTIKIEDTPEFLEYHLNLDQSDVGRVIGRKGRTISAIRTIVYSVPTEYKKVRIVIDEK
>Mature_79_residues
MDTIENLIIAIVKPLISQPDALTIKIEDTPEFLEYHLNLDQSDVGRVIGRKGRTISAIRTIVYSVPTEYKKVRIVIDEK

Specific function: Unknown

COG id: COG1837

COG function: function code R; Predicted RNA-binding protein (contains KH domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 KH domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004088
- InterPro:   IPR020627 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8995; Mature: 8995

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: PS50084 KH_TYPE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTIENLIIAIVKPLISQPDALTIKIEDTPEFLEYHLNLDQSDVGRVIGRKGRTISAIRT
CCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHH
IVYSVPTEYKKVRIVIDEK
HHHHCCCCCEEEEEEEECC
>Mature Secondary Structure
MDTIENLIIAIVKPLISQPDALTIKIEDTPEFLEYHLNLDQSDVGRVIGRKGRTISAIRT
CCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHH
IVYSVPTEYKKVRIVIDEK
HHHHCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]