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The map label for this gene is yesO [H]

Identifier: 116515405

GI number: 116515405

Start: 1510763

End: 1512091

Strand: Reverse

Name: yesO [H]

Synonym: SPD_1495

Alternate gene names: 116515405

Gene position: 1512091-1510763 (Counterclockwise)

Preceding gene: 116516936

Following gene: 116516754

Centisome position: 73.9

GC content: 40.33

Gene sequence:

>1329_bases
ATGAAATTTAGAAAATTAGCTTGTACAGTACTTGCGGGTGCTGCGGTTCTTGGTCTTGCTGCTTGTGGCAATTCTGGCGG
AAGTAAAGATGCTGCCAAATCAGGTGGTGACGGTGCCAAAACAGAAATCACTTGGTGGGCATTCCCAGTATTTACCCAAG
AAAAAACTGGTGACGGTGTTGGAACTTATGAAAAATCAATCATCGAAGCGTTTGAAAAAGCAAACCCAGATATAAAAGTG
AAATTAGAAACCATCGACTTCAAGTCAGGTCCTGAAAAAATCACAACAGCCATCGAAGCAGGAACAGCTCCAGACGTACT
CTTTGATGCACCAGGACGTATCATCCAATACGGTAAAAACGGTAAATTGGCTGAGTTGAACGACCTCTTCACAGATGAAT
TTGTTAAAGATGTCAACAATGAAAACATCGTACAAGCAAGTAAAGCTGGAGACAAGGCTTATATGTATCCGATTAGTTCT
GCCCCATTCTACATGGCAATGAACAAGAAAATGTTAGAAGATGCTGGAGTAGCAAACCTTGTAAAAGAAGGTTGGACAAC
TGATGATTTTGAAAAAGTATTGAAAGCACTTAAAGACAAGGGTTACACACCAGGTTCATTGTTCAGTTCTGGTCAAGGGG
GAGACCAAGGAACACGTGCCTTTATCTCTAACCTTTATAGCGGTTCTGTAACAGATGAAAAAGTTAGCAAATATACAACT
GATGATCCTAAATTCGTCAAAGGTCTTGAAAAAGCAACTAGCTGGATTAAAGACAATTTGATCAATAATGGTTCACAATT
TGACGGTGGGGCAGATATCCAAAACTTTGCCAACGGTCAAACATCTTACACAATCCTTTGGGCACCAGCTCAAAATGGTA
TCCAACCTAAACTTTTAGAAGCAAGTAAGGTAGAAGTGGTAGAAGTACCATTCCCATCAGACGAAGGTAAGCCAGCTCTT
GAATACCTTGTAAACGGATTTGCAGTATTCAACAATAAAGACGACAAGAAAGTCGCTGCATCTAAGAAATTCATCCAGTT
TATCGCAGATGACAAAGAGTGGGGACCTAAAGACGTAGTTCGTACAGGTGCTTTCCCAGTCCGTACTTCATTTGGAAAAC
TTTATGAAGACAAACGCATGGAAACAATCAGCGGCTGGACTCAATACTACTCACCATACTACAACACTATTGATGGTTTT
GCTGAAATGAGAACACTTTGGTTCCCAATGTTGCAATCTGTATCAAATGGTGACGAAAAACCAGCGGATGCTTTGAAAGC
CTTCACTGAAAAAGCAAACGAAACAATCAAAAAAGCTATGAAACAATAG

Upstream 100 bases:

>100_bases
AGAGGAGAGTGATGGATGAGTAGGATGAAATGAAATCGCATACAAGAAATAAAGAACTCATTATCCAAGTTGGATACGCT
TATTACATAGGAGAATACAA

Downstream 100 bases:

>100_bases
TCCTTAGTTATTCTATAAAAAGTAGTTTTTTAAAGAACCTAAGAGTGTATACCCCCTTTTCCCTCTACACAGATAGTGTA
AGAAAAGGGGGCTTTTGTTT

Product: sugar ABC transporter sugar-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 442

Protein sequence:

>442_residues
MKFRKLACTVLAGAAVLGLAACGNSGGSKDAAKSGGDGAKTEITWWAFPVFTQEKTGDGVGTYEKSIIEAFEKANPDIKV
KLETIDFKSGPEKITTAIEAGTAPDVLFDAPGRIIQYGKNGKLAELNDLFTDEFVKDVNNENIVQASKAGDKAYMYPISS
APFYMAMNKKMLEDAGVANLVKEGWTTDDFEKVLKALKDKGYTPGSLFSSGQGGDQGTRAFISNLYSGSVTDEKVSKYTT
DDPKFVKGLEKATSWIKDNLINNGSQFDGGADIQNFANGQTSYTILWAPAQNGIQPKLLEASKVEVVEVPFPSDEGKPAL
EYLVNGFAVFNNKDDKKVAASKKFIQFIADDKEWGPKDVVRTGAFPVRTSFGKLYEDKRMETISGWTQYYSPYYNTIDGF
AEMRTLWFPMLQSVSNGDEKPADALKAFTEKANETIKKAMKQ

Sequences:

>Translated_442_residues
MKFRKLACTVLAGAAVLGLAACGNSGGSKDAAKSGGDGAKTEITWWAFPVFTQEKTGDGVGTYEKSIIEAFEKANPDIKV
KLETIDFKSGPEKITTAIEAGTAPDVLFDAPGRIIQYGKNGKLAELNDLFTDEFVKDVNNENIVQASKAGDKAYMYPISS
APFYMAMNKKMLEDAGVANLVKEGWTTDDFEKVLKALKDKGYTPGSLFSSGQGGDQGTRAFISNLYSGSVTDEKVSKYTT
DDPKFVKGLEKATSWIKDNLINNGSQFDGGADIQNFANGQTSYTILWAPAQNGIQPKLLEASKVEVVEVPFPSDEGKPAL
EYLVNGFAVFNNKDDKKVAASKKFIQFIADDKEWGPKDVVRTGAFPVRTSFGKLYEDKRMETISGWTQYYSPYYNTIDGF
AEMRTLWFPMLQSVSNGDEKPADALKAFTEKANETIKKAMKQ
>Mature_442_residues
MKFRKLACTVLAGAAVLGLAACGNSGGSKDAAKSGGDGAKTEITWWAFPVFTQEKTGDGVGTYEKSIIEAFEKANPDIKV
KLETIDFKSGPEKITTAIEAGTAPDVLFDAPGRIIQYGKNGKLAELNDLFTDEFVKDVNNENIVQASKAGDKAYMYPISS
APFYMAMNKKMLEDAGVANLVKEGWTTDDFEKVLKALKDKGYTPGSLFSSGQGGDQGTRAFISNLYSGSVTDEKVSKYTT
DDPKFVKGLEKATSWIKDNLINNGSQFDGGADIQNFANGQTSYTILWAPAQNGIQPKLLEASKVEVVEVPFPSDEGKPAL
EYLVNGFAVFNNKDDKKVAASKKFIQFIADDKEWGPKDVVRTGAFPVRTSFGKLYEDKRMETISGWTQYYSPYYNTIDGF
AEMRTLWFPMLQSVSNGDEKPADALKAFTEKANETIKKAMKQ

Specific function: May play role in the degradation of type I rhamnogalacturonan derived from plant cell walls [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 48330; Mature: 48330

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFRKLACTVLAGAAVLGLAACGNSGGSKDAAKSGGDGAKTEITWWAFPVFTQEKTGDGV
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCEEEEEEEEEEECCCCCCCC
GTYEKSIIEAFEKANPDIKVKLETIDFKSGPEKITTAIEAGTAPDVLFDAPGRIIQYGKN
CHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCEEECCCCCEEEECCC
GKLAELNDLFTDEFVKDVNNENIVQASKAGDKAYMYPISSAPFYMAMNKKMLEDAGVANL
CCEEHHHHHHHHHHHHHCCCCCEEECCCCCCCEEEEECCCCCEEEHHHHHHHHHCCHHHH
VKEGWTTDDFEKVLKALKDKGYTPGSLFSSGQGGDQGTRAFISNLYSGSVTDEKVSKYTT
HHCCCCCHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHCCC
DDPKFVKGLEKATSWIKDNLINNGSQFDGGADIQNFANGQTSYTILWAPAQNGIQPKLLE
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCC
ASKVEVVEVPFPSDEGKPALEYLVNGFAVFNNKDDKKVAASKKFIQFIADDKEWGPKDVV
CCCEEEEEECCCCCCCCHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHH
RTGAFPVRTSFGKLYEDKRMETISGWTQYYSPYYNTIDGFAEMRTLWFPMLQSVSNGDEK
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PADALKAFTEKANETIKKAMKQ
HHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKFRKLACTVLAGAAVLGLAACGNSGGSKDAAKSGGDGAKTEITWWAFPVFTQEKTGDGV
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCEEEEEEEEEEECCCCCCCC
GTYEKSIIEAFEKANPDIKVKLETIDFKSGPEKITTAIEAGTAPDVLFDAPGRIIQYGKN
CHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCEEECCCCCEEEECCC
GKLAELNDLFTDEFVKDVNNENIVQASKAGDKAYMYPISSAPFYMAMNKKMLEDAGVANL
CCEEHHHHHHHHHHHHHCCCCCEEECCCCCCCEEEEECCCCCEEEHHHHHHHHHCCHHHH
VKEGWTTDDFEKVLKALKDKGYTPGSLFSSGQGGDQGTRAFISNLYSGSVTDEKVSKYTT
HHCCCCCHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHCCC
DDPKFVKGLEKATSWIKDNLINNGSQFDGGADIQNFANGQTSYTILWAPAQNGIQPKLLE
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCC
ASKVEVVEVPFPSDEGKPALEYLVNGFAVFNNKDDKKVAASKKFIQFIADDKEWGPKDVV
CCCEEEEEECCCCCCCCHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHH
RTGAFPVRTSFGKLYEDKRMETISGWTQYYSPYYNTIDGFAEMRTLWFPMLQSVSNGDEK
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PADALKAFTEKANETIKKAMKQ
HHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]