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The map label for this gene is cisA [H]

Identifier: 116515333

GI number: 116515333

Start: 933587

End: 935266

Strand: Direct

Name: cisA [H]

Synonym: SPD_0921

Alternate gene names: 116515333

Gene position: 933587-935266 (Clockwise)

Preceding gene: 116515934

Following gene: 116516667

Centisome position: 45.63

GC content: 33.57

Gene sequence:

>1680_bases
ATGTCAAAAGAAAAAATAAAAGTATACCTCTATACACGAGTATCTACGTCAATACAGATAGAGGGGTATTCGTTAGAGGC
ACAAAAATCACGAATGAAAGCTTTTGCTATTTACAACGATTATGAAATTGTTGGAGAGTATGAAGATGCCGGGAAGTCTG
GCAAGTCTATTGAAGGTAGAATACAGTTCAATCGAATGATGGAAGATATAAAATCTGGAAAAGATGGAGTATCTTTTGTT
CTTGTGTTTAAGTTATCAAGATTTGCAAGAAATGCCGCTGATGTTCTTTCTACACTTCATATAATGCAGGATTATGGAGT
TAATCTTATCTGCGTTGAAGATGGCATTGATTCATCTAAAGATGCTGGGAAACTAATGATTTCTGTTTTATCAGCTGTGG
CTGAAATAGAAAGAGAAAACATCCGTATTCAAACAATGGAAGGTCGCATTCAAAAAGCAAGGGAAGGAAAATGGAATGGT
GGCTTTGCTCCGTATGGATATAAACTTGAAGACGGCAAGCTGTTTATAAATGAGGAAGAGGCAGTTGCAATAAGAACGAT
TTTCGACCAGTATGTAAATACTACGATAGGAGCCAATGGGATATCTAAATACTTAGAGAATCATGGAATTAGAAAAATCC
CAAGACAGAATGGTAAGAATCCTTTGTTTGATGCAGGTCTTATAAGAAAGATATTAAAGAATCCTGTATATAATGGGAAA
ATAGCATTTGGAAGAAGAACTTTAGAAAAAGTTCATGGTACAAGAAATGAATATAAGCAGGTTGAACAAGATGAATATCT
AATATCTGAAGGGATACATGAAGCTATAGTTTCCGATGAAGTTTGGCAAGCTGCTCAGGTTAAGCTAAAATCTCAAGCAA
AGAAATATGAGCATGTGAATAAAGGAAAAGATACACGCACACACTTGCTTTCTGGAATTGTAAAATGCCCGATATGTGGA
GTGGGAATGTTTGGGAACAAGTGTATCAAGAAAAAGAAAGATGGCACAAAGTATAAAGATTTTTATTACTATGGTTGTAA
CCATAGGCAGATGATAAGAGGTCATAAGTGTACATTCAGTAAGCAAATTAGAGAAGAATTGTTAGATGATGCTGTTGCAG
AGGTGATTGTCAAGATAGTAAGTAATCCGAAATTTGCTTCTATGATGCAAGAAAAAATCAACATGAAGGTGGATACCTCT
GAAATAGAAAAAGAAATAGATAATTACCAAAAGGAATTGAGAAAGAGTCATTCTACAAAGTTTAAGCTAATTGAGGAAAT
AGATAATTTAGATGTTGAAGATAAGCATTATAAGAGAAGGAAACAGGATTTAGATGATAGACTATATCGTATGTATGACA
AAATAGATGAATTAGAATCATCACTAATTGATGCGAAAGCAAAGAAACAGACTATTGAAGCTGAAAAGCTTACAGGAGAT
AACATATATAAGGTTCTGATCTATTTTGATAAGCTCTATAAAGTCATGAATGATGTAGAGCGTAGGCAGTTAATTTCAGC
TTTGATTTCTGAAATTCAAGTTTATGAAGAAAAACAATCTAACGGACAATGGCTAAAATCCATTACTTTTAAGCTACCAA
TTATAGAAGAAAATCTCAACATAGATTTGGACAATGATGAACAAGTTGAATGTGTAAGTTTATTAGAGAAACGTAGTTAA

Upstream 100 bases:

>100_bases
ACGGACTAATAAAAGTGTTATAATATACTTGAAATGATAGTCCAAACTTAAATTAAAAAAATTATATATGATATAGAAAA
ATTATATTGAGATTAATACT

Downstream 100 bases:

>100_bases
TCCTCAAAAGGTTCCCCAAACTTTTTGAGTCCCACTGACGCATCACGCTGAGGCGGTATCACTGCTTGTACGAGTTGAAG
CATCAGCGAAGTAAAAGTAG

Product: site-specific recombinase, resolvase family protein

Products: NA

Alternate protein names: Stage IV sporulation protein CA [H]

Number of amino acids: Translated: 559; Mature: 558

Protein sequence:

>559_residues
MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSGKSIEGRIQFNRMMEDIKSGKDGVSFV
LVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSKDAGKLMISVLSAVAEIERENIRIQTMEGRIQKAREGKWNG
GFAPYGYKLEDGKLFINEEEAVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK
IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVNKGKDTRTHLLSGIVKCPICG
VGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGHKCTFSKQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTS
EIEKEIDNYQKELRKSHSTKFKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKIDELESSLIDAKAKKQTIEAEKLTGD
NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLNIDLDNDEQVECVSLLEKRS

Sequences:

>Translated_559_residues
MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSGKSIEGRIQFNRMMEDIKSGKDGVSFV
LVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSKDAGKLMISVLSAVAEIERENIRIQTMEGRIQKAREGKWNG
GFAPYGYKLEDGKLFINEEEAVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK
IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVNKGKDTRTHLLSGIVKCPICG
VGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGHKCTFSKQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTS
EIEKEIDNYQKELRKSHSTKFKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKIDELESSLIDAKAKKQTIEAEKLTGD
NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLNIDLDNDEQVECVSLLEKRS
>Mature_558_residues
SKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSGKSIEGRIQFNRMMEDIKSGKDGVSFVL
VFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSKDAGKLMISVLSAVAEIERENIRIQTMEGRIQKAREGKWNGG
FAPYGYKLEDGKLFINEEEAVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGKI
AFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVNKGKDTRTHLLSGIVKCPICGV
GMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGHKCTFSKQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSE
IEKEIDNYQKELRKSHSTKFKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKIDELESSLIDAKAKKQTIEAEKLTGDN
IYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLNIDLDNDEQVECVSLLEKRS

Specific function: Putative site-specific recombinase having a very important role in sporulation. It probably plays a role in the recombination of spoIIIC and spoIVCB to form sigma K factor [H]

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 recombinase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011109
- InterPro:   IPR006118
- InterPro:   IPR006119 [H]

Pfam domain/function: PF07508 Recombinase; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 64488; Mature: 64357

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSGKSIEGR
CCCCEEEEEEEEEECCEEEEECCCCHHHHHHHHEEEEECCCEEEECHHHCCCCCCCCCHH
IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
DAGKLMISVLSAVAEIERENIRIQTMEGRIQKAREGKWNGGFAPYGYKLEDGKLFINEEE
HHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHCCCCCCCCCCCCEEEECCEEEECCCH
AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK
HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCE
IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN
EEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGHKCTFS
CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCEEEEECCCCHHHHCCCCCCHH
KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHH
FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKIDELESSLIDAKAKKQTIEAEKLTGD
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHEECEEEECCCC
IDLDNDEQVECVSLLEKRS
CCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
SKEKIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSGKSIEGR
CCCEEEEEEEEEECCEEEEECCCCHHHHHHHHEEEEECCCEEEECHHHCCCCCCCCCHH
IQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLHIMQDYGVNLICVEDGIDSSK
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
DAGKLMISVLSAVAEIERENIRIQTMEGRIQKAREGKWNGGFAPYGYKLEDGKLFINEEE
HHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHCCCCCCCCCCCCEEEECCEEEECCCH
AVAIRTIFDQYVNTTIGANGISKYLENHGIRKIPRQNGKNPLFDAGLIRKILKNPVYNGK
HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCE
IAFGRRTLEKVHGTRNEYKQVEQDEYLISEGIHEAIVSDEVWQAAQVKLKSQAKKYEHVN
EEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KGKDTRTHLLSGIVKCPICGVGMFGNKCIKKKKDGTKYKDFYYYGCNHRQMIRGHKCTFS
CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCEEEEECCCCHHHHCCCCCCHH
KQIREELLDDAVAEVIVKIVSNPKFASMMQEKINMKVDTSEIEKEIDNYQKELRKSHSTK
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHH
FKLIEEIDNLDVEDKHYKRRKQDLDDRLYRMYDKIDELESSLIDAKAKKQTIEAEKLTGD
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NIYKVLIYFDKLYKVMNDVERRQLISALISEIQVYEEKQSNGQWLKSITFKLPIIEENLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHEECEEEECCCC
IDLDNDEQVECVSLLEKRS
CCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2105293; 7704261; 8969508; 9384377 [H]