| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
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The map label for this gene is 116494217
Identifier: 116494217
GI number: 116494217
Start: 673290
End: 674000
Strand: Direct
Name: 116494217
Synonym: LSEI_0669
Alternate gene names: NA
Gene position: 673290-674000 (Clockwise)
Preceding gene: 116494216
Following gene: 116494218
Centisome position: 23.25
GC content: 42.62
Gene sequence:
>711_bases ATGCAGACAAAGTTTCTTAAGTTGCCGGTCTATCAACAAGGACTTTTCTTAACGTTGATATGGCTAATGGTCGGGATTGG CGTGATGCTATATCGCTGGCCAACAAGTGATCAGGATTTTCAAACAACCCCCTATTGGCTTGCACCGAATTTGATTCATA TGCAAGGTGAGGTGACCGCTCAATGGTTCCCGTTTGCGTGTGCAGTGACGGCCGGTGTGAGTCTTTATGTCGTCAAGCAT ATTAAAAGTAGAAACTGTGACACTAGAGAGGGCCTTTATGTACTTCAGAATTTGTGGCCCATCTGGTTGGTGACAATCGT AGTATTTTTCTTATTAAATCTTTGGCTACCACAAACAGGGATGACTCGTTTTTCGAGTTTTGATCGACAAGTACTCACGA TTGCAATACTGTTTCTTGATATTACTTTATTTAGTTCTTACATGCTTTGGTTAAACTTCTGGGTGCCGGTTGGCCGGGTA CATAATGTCATTAAGGTTCTATTTTGGGCAGTGCTTTTCCTTGGAGCTGGATTTATTATGAGCCACTTTCAATTTACGTT TGCCAGCAGCTCCTTTAGCTTGGACGATCTAGGACGACGTACATGGTTAACACTGCCATTTTGGCCAAGCTGGTTTTTAG GTTTACTATTAACGGCGGTTATTTGGTGGCACACTTTTCGTCGACTTCGAATGACGGATGATTCTCACTAA
Upstream 100 bases:
>100_bases GCTGCTTTTTTGGTTAGCATTGTGAACAAATAGTTTCAAGTTAATACATAAATGGTTACGCGGTCAAAAGACATGCAATG TGACAAAAGGAGTCGATAGC
Downstream 100 bases:
>100_bases AATAGAGAGACCGGCCGTGCTCACACAACTCAGCAAAAAGATTGAGGGGGTCTAACTGCTGACAAGCGTACAACCTAGTC GGGCGAACCAGCTATCCAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 236; Mature: 236
Protein sequence:
>236_residues MQTKFLKLPVYQQGLFLTLIWLMVGIGVMLYRWPTSDQDFQTTPYWLAPNLIHMQGEVTAQWFPFACAVTAGVSLYVVKH IKSRNCDTREGLYVLQNLWPIWLVTIVVFFLLNLWLPQTGMTRFSSFDRQVLTIAILFLDITLFSSYMLWLNFWVPVGRV HNVIKVLFWAVLFLGAGFIMSHFQFTFASSSFSLDDLGRRTWLTLPFWPSWFLGLLLTAVIWWHTFRRLRMTDDSH
Sequences:
>Translated_236_residues MQTKFLKLPVYQQGLFLTLIWLMVGIGVMLYRWPTSDQDFQTTPYWLAPNLIHMQGEVTAQWFPFACAVTAGVSLYVVKH IKSRNCDTREGLYVLQNLWPIWLVTIVVFFLLNLWLPQTGMTRFSSFDRQVLTIAILFLDITLFSSYMLWLNFWVPVGRV HNVIKVLFWAVLFLGAGFIMSHFQFTFASSSFSLDDLGRRTWLTLPFWPSWFLGLLLTAVIWWHTFRRLRMTDDSH >Mature_236_residues MQTKFLKLPVYQQGLFLTLIWLMVGIGVMLYRWPTSDQDFQTTPYWLAPNLIHMQGEVTAQWFPFACAVTAGVSLYVVKH IKSRNCDTREGLYVLQNLWPIWLVTIVVFFLLNLWLPQTGMTRFSSFDRQVLTIAILFLDITLFSSYMLWLNFWVPVGRV HNVIKVLFWAVLFLGAGFIMSHFQFTFASSSFSLDDLGRRTWLTLPFWPSWFLGLLLTAVIWWHTFRRLRMTDDSH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27775; Mature: 27775
Theoretical pI: Translated: 9.73; Mature: 9.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQTKFLKLPVYQQGLFLTLIWLMVGIGVMLYRWPTSDQDFQTTPYWLAPNLIHMQGEVTA CCCCEEECCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCEEECCCEEEECCCCCH QWFPFACAVTAGVSLYVVKHIKSRNCDTREGLYVLQNLWPIWLVTIVVFFLLNLWLPQTG HHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC MTRFSSFDRQVLTIAILFLDITLFSSYMLWLNFWVPVGRVHNVIKVLFWAVLFLGAGFIM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH SHFQFTFASSSFSLDDLGRRTWLTLPFWPSWFLGLLLTAVIWWHTFRRLRMTDDSH HHHHHHHCCCCCCHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MQTKFLKLPVYQQGLFLTLIWLMVGIGVMLYRWPTSDQDFQTTPYWLAPNLIHMQGEVTA CCCCEEECCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCEEECCCEEEECCCCCH QWFPFACAVTAGVSLYVVKHIKSRNCDTREGLYVLQNLWPIWLVTIVVFFLLNLWLPQTG HHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC MTRFSSFDRQVLTIAILFLDITLFSSYMLWLNFWVPVGRVHNVIKVLFWAVLFLGAGFIM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH SHFQFTFASSSFSLDDLGRRTWLTLPFWPSWFLGLLLTAVIWWHTFRRLRMTDDSH HHHHHHHCCCCCCHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA