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The map label for this gene is ykpA [H]

Identifier: 116494206

GI number: 116494206

Start: 656867

End: 658453

Strand: Direct

Name: ykpA [H]

Synonym: LSEI_0657

Alternate gene names: 116494206

Gene position: 656867-658453 (Clockwise)

Preceding gene: 116494204

Following gene: 116494207

Centisome position: 22.69

GC content: 48.77

Gene sequence:

>1587_bases
TTGAAATTCACGCCCGGTAATTGCTATGGCATTATTGGCGCAAACGGCGCGGGAAAATCGACTTTTCTTAAAATCATCCA
AGGTGAACTGACCCCAACGACTGGGACGGTAAGTTTGTCGCCGAATGAGCGGATGAGCAGTCTGCGTCAGGATCACTTTG
CGTTCGACAATCAAACGGTGATGAACACTGTTTTGCAAGGTTGGGAACGACTTTATCAGGTGATGACGGAAAAAGATGCT
TTGTATGCTAAGCCAGACTTCTCTGAAGCTGACGGGAATAAGGCAGCCGAGCTGGAAGGCGAGTTTGCCGAAATGGACGG
CTGGAACGCTGAAAGCGACGCGTCTCAGCTGTTGCAGTCATTGGGCATTGCGGAAAGTGAGCACCAGAAACTCATGGCTG
ATCTGCCTGAAGGGGAGAAGGTCAAGGTGTTGCTTGCCCAAGCGTTGTTTGGCAAACCCGACGTTCTGCTGCTCGACGAA
CCAACCAACGGGCTTGATCCGCAAGCGATTAACTGGCTTGAGAACTTTTTAGCTGACTATGAACACACCGTTTTGGTTGT
CTCTCATGACCGGCATTTCCTGAATGCGGTCTGCACCATGATGTGTGATGTTGACTTCGGTAAGATCGAACTTTATGTCG
GCAACTACGATTTCTGGAAGCAGAGTTCTGAACTGGCCTTGCAACTGCAAAGCCAAGCAAATGCCAAAAAAGAAGAACAA
ATCAAGCAGCTTCAGGAGTTCGTGGCGCGTTTCTCCGCCAACGCCTCAAAGTCCAAGCAGGCCACTTCACGTAAAAAGCA
GCTTGAAAAAATTACGTTAGATGATATTCGGCCTAGCACACGGAAATATCCGTACATCAAGTTCGAACCAGAACGCGAAA
TCGGTAACGATTTGTTACGGGTCGAGCATGTTTCCAAGACAATTGATGGTCATGAAGTACTGAAAAATGTCAGCTTCATT
TTGCGGCCAGGTGACAAAACAGGGATCATCAGCCGCAATGACGTGACTGCCACTGTGCTGATGCAGCTGCTGGCAGGTGA
GCTTAAACCTGACACCGGCACCATCACATGGGGTGTCACCACCAGCCGTGCCGCTATGCCAAAAGACTTGAATCCTGAAT
TTGATCATGATGATCTGAACATTCTCGATTGGTTGCGGCAGTTTGCGCCACAAGACGAACAAGATAACACGTTCTTGCGT
GGCTTCCTCGGTCGGATGCTCTTTTCTGGGGATGAAGTGCTCAAGCAACTGAACGTCTTGTCTGGTGGCGAAAAGGTCCG
TTCATACTTGGCCAAAATGATGCTGAGCAAGGCAAACGTCCTCATCATGGACGACCCAACCAACCATCTTGATTTGGAAA
GCATCACCAGTTTGAACGACGCCTTGATCGACTTCAAAGGCTCATTAATCTTCACCAGTCATGACCATCAGTTCATTCAA
ACCATTGCTGATCATATTATCGAGGTTGGGCCACTCGGTGTTGTTGACCGTGCGGACACAAGCTATGATGAATTCACGCA
ACACGAAACCGCTCAGGCCCAGGTAGCCGATATTTATCCGGCTGATAAAAAGAAGTCAAAGGCGTAA

Upstream 100 bases:

>100_bases
CTAATATATGTAGAAATCTTTTAAGCGAGGTATAAAATTGCTCACAGTAAACAATGTATCAATGACGTTCTCCGACCGTA
AGCTATACGAAGACGTTAAT

Downstream 100 bases:

>100_bases
TTGCCGATATCACCTTGAGCGTTACAGCTTGTGACATCATACGCAGTTACTGTACAGGCGAACAATTTTCCGCAGTCAGG
GAAATTGTTCGTCTGTTTGT

Product: ABC transporter ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 528; Mature: 528

Protein sequence:

>528_residues
MKFTPGNCYGIIGANGAGKSTFLKIIQGELTPTTGTVSLSPNERMSSLRQDHFAFDNQTVMNTVLQGWERLYQVMTEKDA
LYAKPDFSEADGNKAAELEGEFAEMDGWNAESDASQLLQSLGIAESEHQKLMADLPEGEKVKVLLAQALFGKPDVLLLDE
PTNGLDPQAINWLENFLADYEHTVLVVSHDRHFLNAVCTMMCDVDFGKIELYVGNYDFWKQSSELALQLQSQANAKKEEQ
IKQLQEFVARFSANASKSKQATSRKKQLEKITLDDIRPSTRKYPYIKFEPEREIGNDLLRVEHVSKTIDGHEVLKNVSFI
LRPGDKTGIISRNDVTATVLMQLLAGELKPDTGTITWGVTTSRAAMPKDLNPEFDHDDLNILDWLRQFAPQDEQDNTFLR
GFLGRMLFSGDEVLKQLNVLSGGEKVRSYLAKMMLSKANVLIMDDPTNHLDLESITSLNDALIDFKGSLIFTSHDHQFIQ
TIADHIIEVGPLGVVDRADTSYDEFTQHETAQAQVADIYPADKKKSKA

Sequences:

>Translated_528_residues
MKFTPGNCYGIIGANGAGKSTFLKIIQGELTPTTGTVSLSPNERMSSLRQDHFAFDNQTVMNTVLQGWERLYQVMTEKDA
LYAKPDFSEADGNKAAELEGEFAEMDGWNAESDASQLLQSLGIAESEHQKLMADLPEGEKVKVLLAQALFGKPDVLLLDE
PTNGLDPQAINWLENFLADYEHTVLVVSHDRHFLNAVCTMMCDVDFGKIELYVGNYDFWKQSSELALQLQSQANAKKEEQ
IKQLQEFVARFSANASKSKQATSRKKQLEKITLDDIRPSTRKYPYIKFEPEREIGNDLLRVEHVSKTIDGHEVLKNVSFI
LRPGDKTGIISRNDVTATVLMQLLAGELKPDTGTITWGVTTSRAAMPKDLNPEFDHDDLNILDWLRQFAPQDEQDNTFLR
GFLGRMLFSGDEVLKQLNVLSGGEKVRSYLAKMMLSKANVLIMDDPTNHLDLESITSLNDALIDFKGSLIFTSHDHQFIQ
TIADHIIEVGPLGVVDRADTSYDEFTQHETAQAQVADIYPADKKKSKA
>Mature_528_residues
MKFTPGNCYGIIGANGAGKSTFLKIIQGELTPTTGTVSLSPNERMSSLRQDHFAFDNQTVMNTVLQGWERLYQVMTEKDA
LYAKPDFSEADGNKAAELEGEFAEMDGWNAESDASQLLQSLGIAESEHQKLMADLPEGEKVKVLLAQALFGKPDVLLLDE
PTNGLDPQAINWLENFLADYEHTVLVVSHDRHFLNAVCTMMCDVDFGKIELYVGNYDFWKQSSELALQLQSQANAKKEEQ
IKQLQEFVARFSANASKSKQATSRKKQLEKITLDDIRPSTRKYPYIKFEPEREIGNDLLRVEHVSKTIDGHEVLKNVSFI
LRPGDKTGIISRNDVTATVLMQLLAGELKPDTGTITWGVTTSRAAMPKDLNPEFDHDDLNILDWLRQFAPQDEQDNTFLR
GFLGRMLFSGDEVLKQLNVLSGGEKVRSYLAKMMLSKANVLIMDDPTNHLDLESITSLNDALIDFKGSLIFTSHDHQFIQ
TIADHIIEVGPLGVVDRADTSYDEFTQHETAQAQVADIYPADKKKSKA

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=521, Percent_Identity=31.4779270633397, Blast_Score=226, Evalue=5e-59,
Organism=Homo sapiens, GI27881506, Length=495, Percent_Identity=30.7070707070707, Blast_Score=202, Evalue=5e-52,
Organism=Homo sapiens, GI10947137, Length=492, Percent_Identity=30.4878048780488, Blast_Score=202, Evalue=6e-52,
Organism=Homo sapiens, GI10947135, Length=506, Percent_Identity=28.4584980237154, Blast_Score=145, Evalue=7e-35,
Organism=Homo sapiens, GI69354671, Length=509, Percent_Identity=28.6836935166994, Blast_Score=145, Evalue=9e-35,
Organism=Homo sapiens, GI105990541, Length=203, Percent_Identity=30.5418719211823, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI21536376, Length=200, Percent_Identity=29.5, Blast_Score=77, Evalue=4e-14,
Organism=Escherichia coli, GI1787041, Length=496, Percent_Identity=47.5806451612903, Blast_Score=488, Evalue=1e-139,
Organism=Escherichia coli, GI1789751, Length=489, Percent_Identity=32.719836400818, Blast_Score=265, Evalue=5e-72,
Organism=Escherichia coli, GI2367384, Length=521, Percent_Identity=30.3262955854127, Blast_Score=233, Evalue=2e-62,
Organism=Escherichia coli, GI1787182, Length=474, Percent_Identity=29.535864978903, Blast_Score=189, Evalue=4e-49,
Organism=Escherichia coli, GI1786398, Length=208, Percent_Identity=25.9615384615385, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1787548, Length=213, Percent_Identity=28.6384976525822, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI1787105, Length=195, Percent_Identity=27.1794871794872, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI1789864, Length=224, Percent_Identity=24.5535714285714, Blast_Score=62, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17553372, Length=493, Percent_Identity=31.6430020283976, Blast_Score=207, Evalue=8e-54,
Organism=Caenorhabditis elegans, GI17555318, Length=519, Percent_Identity=29.2870905587669, Blast_Score=207, Evalue=1e-53,
Organism=Caenorhabditis elegans, GI17559834, Length=504, Percent_Identity=27.3809523809524, Blast_Score=175, Evalue=5e-44,
Organism=Saccharomyces cerevisiae, GI6320874, Length=507, Percent_Identity=30.5719921104536, Blast_Score=212, Evalue=1e-55,
Organism=Saccharomyces cerevisiae, GI6321121, Length=526, Percent_Identity=29.277566539924, Blast_Score=186, Evalue=5e-48,
Organism=Saccharomyces cerevisiae, GI6325030, Length=216, Percent_Identity=30.5555555555556, Blast_Score=83, Evalue=9e-17,
Organism=Saccharomyces cerevisiae, GI6324314, Length=226, Percent_Identity=27.4336283185841, Blast_Score=75, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6323278, Length=215, Percent_Identity=27.906976744186, Blast_Score=71, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6320266, Length=272, Percent_Identity=25.3676470588235, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24666836, Length=496, Percent_Identity=29.2338709677419, Blast_Score=204, Evalue=1e-52,
Organism=Drosophila melanogaster, GI24642252, Length=492, Percent_Identity=27.8455284552846, Blast_Score=198, Evalue=6e-51,
Organism=Drosophila melanogaster, GI18859989, Length=492, Percent_Identity=27.8455284552846, Blast_Score=198, Evalue=6e-51,
Organism=Drosophila melanogaster, GI24641342, Length=493, Percent_Identity=29.6146044624746, Blast_Score=185, Evalue=6e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 59114; Mature: 59114

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFTPGNCYGIIGANGAGKSTFLKIIQGELTPTTGTVSLSPNERMSSLRQDHFAFDNQTV
CCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHCCCCHHH
MNTVLQGWERLYQVMTEKDALYAKPDFSEADGNKAAELEGEFAEMDGWNAESDASQLLQS
HHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHCCCCHHHCCCCCCCHHHHHHHHH
LGIAESEHQKLMADLPEGEKVKVLLAQALFGKPDVLLLDEPTNGLDPQAINWLENFLADY
HCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC
EHTVLVVSHDRHFLNAVCTMMCDVDFGKIELYVGNYDFWKQSSELALQLQSQANAKKEEQ
CCEEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCCHHHHHHHHHHCCCHHHHH
IKQLQEFVARFSANASKSKQATSRKKQLEKITLDDIRPSTRKYPYIKFEPEREIGNDLLR
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHH
VEHVSKTIDGHEVLKNVSFILRPGDKTGIISRNDVTATVLMQLLAGELKPDTGTITWGVT
HHHHHHHCCHHHHHHCCCEEECCCCCCCCEECCCHHHHHHHHHHHCCCCCCCCEEEECCC
TSRAAMPKDLNPEFDHDDLNILDWLRQFAPQDEQDNTFLRGFLGRMLFSGDEVLKQLNVL
CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHC
SGGEKVRSYLAKMMLSKANVLIMDDPTNHLDLESITSLNDALIDFKGSLIFTSHDHQFIQ
CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEECCCHHHHH
TIADHIIEVGPLGVVDRADTSYDEFTQHETAQAQVADIYPADKKKSKA
HHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MKFTPGNCYGIIGANGAGKSTFLKIIQGELTPTTGTVSLSPNERMSSLRQDHFAFDNQTV
CCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHCCCCHHH
MNTVLQGWERLYQVMTEKDALYAKPDFSEADGNKAAELEGEFAEMDGWNAESDASQLLQS
HHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHCCCCHHHCCCCCCCHHHHHHHHH
LGIAESEHQKLMADLPEGEKVKVLLAQALFGKPDVLLLDEPTNGLDPQAINWLENFLADY
HCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC
EHTVLVVSHDRHFLNAVCTMMCDVDFGKIELYVGNYDFWKQSSELALQLQSQANAKKEEQ
CCEEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCCHHHHHHHHHHCCCHHHHH
IKQLQEFVARFSANASKSKQATSRKKQLEKITLDDIRPSTRKYPYIKFEPEREIGNDLLR
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHH
VEHVSKTIDGHEVLKNVSFILRPGDKTGIISRNDVTATVLMQLLAGELKPDTGTITWGVT
HHHHHHHCCHHHHHHCCCEEECCCCCCCCEECCCHHHHHHHHHHHCCCCCCCCEEEECCC
TSRAAMPKDLNPEFDHDDLNILDWLRQFAPQDEQDNTFLRGFLGRMLFSGDEVLKQLNVL
CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHC
SGGEKVRSYLAKMMLSKANVLIMDDPTNHLDLESITSLNDALIDFKGSLIFTSHDHQFIQ
CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEECCCHHHHH
TIADHIIEVGPLGVVDRADTSYDEFTQHETAQAQVADIYPADKKKSKA
HHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]