| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
Click here to switch to the map view.
The map label for this gene is 116494104
Identifier: 116494104
GI number: 116494104
Start: 541811
End: 542059
Strand: Direct
Name: 116494104
Synonym: LSEI_0547
Alternate gene names: NA
Gene position: 541811-542059 (Clockwise)
Preceding gene: 116494103
Following gene: 116494105
Centisome position: 18.71
GC content: 52.21
Gene sequence:
>249_bases ATGATGCCAGCTATTTATGCAGATGAAATGCAAGCGCTCGGCAGTGAGTTGCCTGTGATTGACAACCTCGCCGATTATCC AACCGTCAGCTTGCAACCAACGTCCACCAAAATGAGACGGGTTGCTTGGCAGCAGGTTGCCGACAATCAGTATCGAGCGT TATACGCTTTGGAGCCGATCATCAAACCGGTTCCTGGTGCGGAAGAGAACGTCACATGGGAGGAGGACGGTGAAGATGGC GAGGACTAA
Upstream 100 bases:
>100_bases ATCAGGATCGAGAACGTGAACAAGACAAGAAGAAACAGGAACAGCAGACGCGCTTTTACTAGGGCGTTTTTTGTTTGTCT TCTATATAGAAAGGAAAGTA
Downstream 100 bases:
>100_bases AGCTGAGATCAAAGCCTGGGAACATGAGATGGCGCAGCGAGCCACAGAACAATTAAGTGCACTTGCTGATACCCAAAAGT TTAAACAATACCTTCGGCAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 82; Mature: 82
Protein sequence:
>82_residues MMPAIYADEMQALGSELPVIDNLADYPTVSLQPTSTKMRRVAWQQVADNQYRALYALEPIIKPVPGAEENVTWEEDGEDG ED
Sequences:
>Translated_82_residues MMPAIYADEMQALGSELPVIDNLADYPTVSLQPTSTKMRRVAWQQVADNQYRALYALEPIIKPVPGAEENVTWEEDGEDG ED >Mature_82_residues MMPAIYADEMQALGSELPVIDNLADYPTVSLQPTSTKMRRVAWQQVADNQYRALYALEPIIKPVPGAEENVTWEEDGEDG ED
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 9183; Mature: 9183
Theoretical pI: Translated: 3.72; Mature: 3.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.9 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMPAIYADEMQALGSELPVIDNLADYPTVSLQPTSTKMRRVAWQQVADNQYRALYALEPI CCCCCCHHHHHHCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHH IKPVPGAEENVTWEEDGEDGED HCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MMPAIYADEMQALGSELPVIDNLADYPTVSLQPTSTKMRRVAWQQVADNQYRALYALEPI CCCCCCHHHHHHCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHH IKPVPGAEENVTWEEDGEDGED HCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA