| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
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The map label for this gene is 116494091
Identifier: 116494091
GI number: 116494091
Start: 528801
End: 531260
Strand: Direct
Name: 116494091
Synonym: LSEI_0534
Alternate gene names: NA
Gene position: 528801-531260 (Clockwise)
Preceding gene: 116494090
Following gene: 116494092
Centisome position: 18.26
GC content: 45.85
Gene sequence:
>2460_bases ATGAACCACGAAAAAAGGCAGTGGCGTGAAGCGCTTGGTAATAAACGATTTCTAATCGTGATTGCAGGACTTTGGTTGAT AGGTGGCCTGCTGATCCTTAATTGGTTGACACATATTCCGTCAATGTTCTTAAAACTGATGAAACAGGCACCTAGTTTAC AAACAATTGTCTCGACGGTGCTACATCCGGCTAACTTTTTATGGCCTGATTTCACCTATCTGCTGGTAGCACTGTTGTAC TTGGTTGGCCTAGTTGCACTGGTCATTTATGTACTCATACGCACCTATCGTTGGCGCAAAGCCTTTCAGTCCATTAATAC TGGACAAAAAGGCACCGGACTCTTTGCACGGGTAGCTGAGGTGGCGGCCGCAAGTATCGCCATTCCATTAAATGACTATC CATATGTCGGTAAGTCAGGGGTACCTCAGCTCCATATTAAAAAGGATCAAATGGACAAATATGAATTGAAGACTGTTGTG CAGCAGTATCGCGGTGCCGACCAGCATCATGGCGTTGATCTAGTGGATACTAGTGGCACCAATACAGTTGCTGTGGCTGG GCCAGGTGGTGGGAAGACCACACTATTTTCCTTGCCAGTGTTGGATTTTATTATGCGAGCATCCGTCCATGACTCTGTTA TTATCACCGATGTTAAAGGCGAAATGCTTCGTAGCACCAAAGCAGAATTTGAGGCACGTGGTTATCGAGTTGCGGCTTTA AACCTAGTTGATCCGACTTACTCGATTGCCTATAACCCACTTGAGCTAGTGAAACAAGCGTACGCTGCTGGAGACTTTGA TAATGCGCAGATGTTGTGCAATACCTTTTCTTACAGTATTTTCCACAATCCGAATGCAAAGGAACCGATGTGGGAACAGT CGTCTATTTCACTGCTAAACGCCTTGATTCTAGCGGTATGTAAGGTCTGCTTTGATCAACACACACCTGAGAAAATCACG ATGTATACTGTCACCACTATGTTGAGTGAACTAGGGGCTAATCCAGATGAGAATGGCATGACCAAACTGGACAAGTTCTT CTCCAAGTTGCCCTCTGGTGATCCAGCCAAATTGCAGTATGGCACAATTCAATTTTCGCAAGGGATTACCCGTAGCGGTA TCTTTACTGGTACGATGGCAGGCATTAAGAACTACGCTTTTAGTAATATTGGCCGCTTAACGGCCACAAACGACTTTAAT ATTGCCGACTTAGCCACTGGTGACAAACCAGTGGCTTTCTTTATCATCTACCCAGATTACGACAACTCGAACTACTCACT AGTTGCGACCTTTCTATCGCAGGTGGGCTATGTGTTGGCTAAGATGGCGACGCTCGCAGCTGACTCAAAGCTCAAGCGGC GGGTGATTAATCTGTATGAGGAACTGGGTAACTTGCCACGTATTGAAGGACTACCACATTACCTCAACGTTGGTCGTGGA CGTGGTCTGGTCTATTACCTGATTTTGCAGTCGATTGCACAGTTGGAGGCCAATTATGGCAAGGAAGGCGCTGCCGAAAT CATGGGTGCCTGTGGCAACAAGTATGACATTTTGGCCGATAACTACGATGATGCAGAATACTTCTCCAAACAAATTGGAC AAACAACGGTGATTGCACCATCGCGTCACGGGGCACCAATGGACACGGACAAGTCGTTTGGCGAGTCTCAAGAGACCAGA AGACTGATGATGCCCGATGAGTTGCTTCGACTCAGAAAAGGCGAAGTGGTGCTAATTCGTAGTAAGCAACGATCTGATCT CAACAATCGCTCGATCACAGCTTGGCCGATTCATGCCAACCCGGATGAGGGCACTGAGTTACCATTTTCGTTTGAATATC TGACACGGTTTAATCACCAGGCAACCTTTGCCGAGTTGTATGGCGATAAGAAGCCAGCACATAACGACATTGATCTCAAA AAACTGTTGCTGGATATTACCGTGACAACGATTGAACCGCAGAATGAAAATGATGATCCTGAAATCACAGTTAAAGTGAA TGGTCATTCACTCAATGCCGAAAACGATGAGCCGCAGGTAGAACAAAGTGCGTCTGAACCAGCAGCAACTGATGAAAATC TGGAACAAAAGACCGAAGAAACGCCAGCTGCGGGTTCACAGAAGCCAACACATGATTCGAAGCCAAACCAAGGCAGTAAT CAACAAAAGCAGCAGTTTCAGGAACCTCAAGATCCTAAAAAACAAATCACCACAGAGATTGATCAACAAACAACGCCGTT ATCGGCTTTGTTTAGCCAATCGCAACTACAGATGATTGAAAAGGGCGTTCAGGAGCTGCTCACACAAGATGACTACGCTG AATATCAGTCGCTGGATTCTGTTGAAGCGATGACTCATTGGCTAAATGCTCGGCGAGCCATGAAAAGCTTTGCTGCGCAA CTGGACTTTGCTTATCAAAAACTCGATGCATTCAAGAAGAAAGAAGGTGACAATGCTTGA
Upstream 100 bases:
>100_bases TCAAAATCGCTTATCAAAGACTTAGAAGGGTGTATTGGCGATTAGTGGAATGGATGGCGAGTCGTCATGAATAACAGGTC GTAGCAGAAAGGAGGTCAGC
Downstream 100 bases:
>100_bases GTACCATTGAATATTTGGAAAAGTTTCAGCCAGTGTTGCACAAAGCAACATGGATCAACGATGGCCTACGGTGGATTGGC TGGCAAATCATTCGTATGTT
Product: Type IV secretory pathway, VirD4 component
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 819; Mature: 819
Protein sequence:
>819_residues MNHEKRQWREALGNKRFLIVIAGLWLIGGLLILNWLTHIPSMFLKLMKQAPSLQTIVSTVLHPANFLWPDFTYLLVALLY LVGLVALVIYVLIRTYRWRKAFQSINTGQKGTGLFARVAEVAAASIAIPLNDYPYVGKSGVPQLHIKKDQMDKYELKTVV QQYRGADQHHGVDLVDTSGTNTVAVAGPGGGKTTLFSLPVLDFIMRASVHDSVIITDVKGEMLRSTKAEFEARGYRVAAL NLVDPTYSIAYNPLELVKQAYAAGDFDNAQMLCNTFSYSIFHNPNAKEPMWEQSSISLLNALILAVCKVCFDQHTPEKIT MYTVTTMLSELGANPDENGMTKLDKFFSKLPSGDPAKLQYGTIQFSQGITRSGIFTGTMAGIKNYAFSNIGRLTATNDFN IADLATGDKPVAFFIIYPDYDNSNYSLVATFLSQVGYVLAKMATLAADSKLKRRVINLYEELGNLPRIEGLPHYLNVGRG RGLVYYLILQSIAQLEANYGKEGAAEIMGACGNKYDILADNYDDAEYFSKQIGQTTVIAPSRHGAPMDTDKSFGESQETR RLMMPDELLRLRKGEVVLIRSKQRSDLNNRSITAWPIHANPDEGTELPFSFEYLTRFNHQATFAELYGDKKPAHNDIDLK KLLLDITVTTIEPQNENDDPEITVKVNGHSLNAENDEPQVEQSASEPAATDENLEQKTEETPAAGSQKPTHDSKPNQGSN QQKQQFQEPQDPKKQITTEIDQQTTPLSALFSQSQLQMIEKGVQELLTQDDYAEYQSLDSVEAMTHWLNARRAMKSFAAQ LDFAYQKLDAFKKKEGDNA
Sequences:
>Translated_819_residues MNHEKRQWREALGNKRFLIVIAGLWLIGGLLILNWLTHIPSMFLKLMKQAPSLQTIVSTVLHPANFLWPDFTYLLVALLY LVGLVALVIYVLIRTYRWRKAFQSINTGQKGTGLFARVAEVAAASIAIPLNDYPYVGKSGVPQLHIKKDQMDKYELKTVV QQYRGADQHHGVDLVDTSGTNTVAVAGPGGGKTTLFSLPVLDFIMRASVHDSVIITDVKGEMLRSTKAEFEARGYRVAAL NLVDPTYSIAYNPLELVKQAYAAGDFDNAQMLCNTFSYSIFHNPNAKEPMWEQSSISLLNALILAVCKVCFDQHTPEKIT MYTVTTMLSELGANPDENGMTKLDKFFSKLPSGDPAKLQYGTIQFSQGITRSGIFTGTMAGIKNYAFSNIGRLTATNDFN IADLATGDKPVAFFIIYPDYDNSNYSLVATFLSQVGYVLAKMATLAADSKLKRRVINLYEELGNLPRIEGLPHYLNVGRG RGLVYYLILQSIAQLEANYGKEGAAEIMGACGNKYDILADNYDDAEYFSKQIGQTTVIAPSRHGAPMDTDKSFGESQETR RLMMPDELLRLRKGEVVLIRSKQRSDLNNRSITAWPIHANPDEGTELPFSFEYLTRFNHQATFAELYGDKKPAHNDIDLK KLLLDITVTTIEPQNENDDPEITVKVNGHSLNAENDEPQVEQSASEPAATDENLEQKTEETPAAGSQKPTHDSKPNQGSN QQKQQFQEPQDPKKQITTEIDQQTTPLSALFSQSQLQMIEKGVQELLTQDDYAEYQSLDSVEAMTHWLNARRAMKSFAAQ LDFAYQKLDAFKKKEGDNA >Mature_819_residues MNHEKRQWREALGNKRFLIVIAGLWLIGGLLILNWLTHIPSMFLKLMKQAPSLQTIVSTVLHPANFLWPDFTYLLVALLY LVGLVALVIYVLIRTYRWRKAFQSINTGQKGTGLFARVAEVAAASIAIPLNDYPYVGKSGVPQLHIKKDQMDKYELKTVV QQYRGADQHHGVDLVDTSGTNTVAVAGPGGGKTTLFSLPVLDFIMRASVHDSVIITDVKGEMLRSTKAEFEARGYRVAAL NLVDPTYSIAYNPLELVKQAYAAGDFDNAQMLCNTFSYSIFHNPNAKEPMWEQSSISLLNALILAVCKVCFDQHTPEKIT MYTVTTMLSELGANPDENGMTKLDKFFSKLPSGDPAKLQYGTIQFSQGITRSGIFTGTMAGIKNYAFSNIGRLTATNDFN IADLATGDKPVAFFIIYPDYDNSNYSLVATFLSQVGYVLAKMATLAADSKLKRRVINLYEELGNLPRIEGLPHYLNVGRG RGLVYYLILQSIAQLEANYGKEGAAEIMGACGNKYDILADNYDDAEYFSKQIGQTTVIAPSRHGAPMDTDKSFGESQETR RLMMPDELLRLRKGEVVLIRSKQRSDLNNRSITAWPIHANPDEGTELPFSFEYLTRFNHQATFAELYGDKKPAHNDIDLK KLLLDITVTTIEPQNENDDPEITVKVNGHSLNAENDEPQVEQSASEPAATDENLEQKTEETPAAGSQKPTHDSKPNQGSN QQKQQFQEPQDPKKQITTEIDQQTTPLSALFSQSQLQMIEKGVQELLTQDDYAEYQSLDSVEAMTHWLNARRAMKSFAAQ LDFAYQKLDAFKKKEGDNA
Specific function: Unknown
COG id: COG3505
COG function: function code U; Type IV secretory pathway, VirD4 components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003688 [H]
Pfam domain/function: PF02534 TraG [H]
EC number: NA
Molecular weight: Translated: 91391; Mature: 91391
Theoretical pI: Translated: 5.88; Mature: 5.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNHEKRQWREALGNKRFLIVIAGLWLIGGLLILNWLTHIPSMFLKLMKQAPSLQTIVSTV CCCHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH LHPANFLWPDFTYLLVALLYLVGLVALVIYVLIRTYRWRKAFQSINTGQKGTGLFARVAE HCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH VAAASIAIPLNDYPYVGKSGVPQLHIKKDQMDKYELKTVVQQYRGADQHHGVDLVDTSGT HHHHHEEEECCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCHHCCCEEEECCCC NTVAVAGPGGGKTTLFSLPVLDFIMRASVHDSVIITDVKGEMLRSTKAEFEARGYRVAAL CEEEEECCCCCCCEEEHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEE NLVDPTYSIAYNPLELVKQAYAAGDFDNAQMLCNTFSYSIFHNPNAKEPMWEQSSISLLN EEECCCHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHH ALILAVCKVCFDQHTPEKITMYTVTTMLSELGANPDENGMTKLDKFFSKLPSGDPAKLQY HHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEE GTIQFSQGITRSGIFTGTMAGIKNYAFSNIGRLTATNDFNIADLATGDKPVAFFIIYPDY EEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCEECCCCCCEEEEEEEECC DNSNYSLVATFLSQVGYVLAKMATLAADSKLKRRVINLYEELGNLPRIEGLPHYLNVGRG CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCC RGLVYYLILQSIAQLEANYGKEGAAEIMGACGNKYDILADNYDDAEYFSKQIGQTTVIAP CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEECCCCCHHHHHHHHCCCEEEECC SRHGAPMDTDKSFGESQETRRLMMPDELLRLRKGEVVLIRSKQRSDLNNRSITAWPIHAN CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEECC PDEGTELPFSFEYLTRFNHQATFAELYGDKKPAHNDIDLKKLLLDITVTTIEPQNENDDP CCCCCCCCEEHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHEEEEECCCCCCCCC EITVKVNGHSLNAENDEPQVEQSASEPAATDENLEQKTEETPAAGSQKPTHDSKPNQGSN EEEEEECCCEECCCCCCCHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC QQKQQFQEPQDPKKQITTEIDQQTTPLSALFSQSQLQMIEKGVQELLTQDDYAEYQSLDS HHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH VEAMTHWLNARRAMKSFAAQLDFAYQKLDAFKKKEGDNA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MNHEKRQWREALGNKRFLIVIAGLWLIGGLLILNWLTHIPSMFLKLMKQAPSLQTIVSTV CCCHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH LHPANFLWPDFTYLLVALLYLVGLVALVIYVLIRTYRWRKAFQSINTGQKGTGLFARVAE HCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH VAAASIAIPLNDYPYVGKSGVPQLHIKKDQMDKYELKTVVQQYRGADQHHGVDLVDTSGT HHHHHEEEECCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCHHCCCEEEECCCC NTVAVAGPGGGKTTLFSLPVLDFIMRASVHDSVIITDVKGEMLRSTKAEFEARGYRVAAL CEEEEECCCCCCCEEEHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEE NLVDPTYSIAYNPLELVKQAYAAGDFDNAQMLCNTFSYSIFHNPNAKEPMWEQSSISLLN EEECCCHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHH ALILAVCKVCFDQHTPEKITMYTVTTMLSELGANPDENGMTKLDKFFSKLPSGDPAKLQY HHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEE GTIQFSQGITRSGIFTGTMAGIKNYAFSNIGRLTATNDFNIADLATGDKPVAFFIIYPDY EEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCEECCCCCCEEEEEEEECC DNSNYSLVATFLSQVGYVLAKMATLAADSKLKRRVINLYEELGNLPRIEGLPHYLNVGRG CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCC RGLVYYLILQSIAQLEANYGKEGAAEIMGACGNKYDILADNYDDAEYFSKQIGQTTVIAP CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEECCCCCHHHHHHHHCCCEEEECC SRHGAPMDTDKSFGESQETRRLMMPDELLRLRKGEVVLIRSKQRSDLNNRSITAWPIHAN CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEECC PDEGTELPFSFEYLTRFNHQATFAELYGDKKPAHNDIDLKKLLLDITVTTIEPQNENDDP CCCCCCCCEEHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHEEEEECCCCCCCCC EITVKVNGHSLNAENDEPQVEQSASEPAATDENLEQKTEETPAAGSQKPTHDSKPNQGSN EEEEEECCCEECCCCCCCHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC QQKQQFQEPQDPKKQITTEIDQQTTPLSALFSQSQLQMIEKGVQELLTQDDYAEYQSLDS HHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH VEAMTHWLNARRAMKSFAAQLDFAYQKLDAFKKKEGDNA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10475962; 12004073 [H]