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The map label for this gene is rtn [C]

Identifier: 116493517

GI number: 116493517

Start: 1766132

End: 1766857

Strand: Reverse

Name: rtn [C]

Synonym: PEPE_1789

Alternate gene names: 116493517

Gene position: 1766857-1766132 (Counterclockwise)

Preceding gene: 116493518

Following gene: 116493515

Centisome position: 96.42

GC content: 35.26

Gene sequence:

>726_bases
TTGAGCGAACTTGAACAAAAATTAGAAGGAATTTGCTTCTATGAACAACCGATTTTTTTGATAGATGCGGCCGAAAAGGA
AGAAAAAAAGGTCATCGGGAGCGAATTACTACTTAGAAAAACTGGTGGAGAGAATCGTTTCCCCGCAATGCTATATAAGG
AATACATGCGTGATGATGCATCAAATTTAGTTTTTTGTACATGGTTAGTTAAAAACATCATTGAGATTATTAACGATAAT
CCTGGTATCCAATATAGCTTTAACCTCGACCCGCAGCAACTATTATATGATTCTACGTTTGAAGCAATGAAAGGTTTAAT
TCCTTATTGTGATCGGGTGATGATTGAAGTTACGGAAAGTATCCCTAGTAACCGTGATATTGACCAATATTTCAATTATT
CTGTACGAGATCAAATTAAGAGAATCCATGAAATGGGCTTCAGTGTTGCAGTTGATGATGTTTCTAGTGGAATGAATAGT
TTTAATGCCGTTCGTGAATACACGCAGGATATTGATCGTCTCAAGCTATCACTAATTCAACTACGTAATGTAGAAGAAGG
GATGATTACAGTTACAATTTCTTTATGGAAAGCACTAGCTGCAAGTACTGGAATTGATCTTGTAATTGAAGGGATTGATA
GTCTTGAAGTTAGTAAATGGCTCTTAGAAAATGGTTTAGAAAAACAGCAAGGTTACTATTTCGCAACCCCAAGAAAATTA
AAATAA

Upstream 100 bases:

>100_bases
ATTTCCAAACATTCTACAAACGTGTGGATGATTATTTGTATCAATCTAAGAGAAACAAACGTAATAGTATTACGGTTGAG
GGAAAGGTGGCCTCGCTAAA

Downstream 100 bases:

>100_bases
AAGCTTAAAAAAGCGAAAAAATCAGTTATGATTTTTTCGCTTTTCGCTTATTTAAATTTCTGATTTATTTTCAGAGGTTC
CATACATTTTAGGAGAAACG

Product: C-di-GMP-specific phosphodiesterase

Products: NA

Alternate protein names: Cyclic Diguanylate Phosphodiesterase Domain Protein; Cyclic-Di-GMP-Specific Phosphodiesterase; EAL Domain Protein; EAL Domain-Containing Protein

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MSELEQKLEGICFYEQPIFLIDAAEKEEKKVIGSELLLRKTGGENRFPAMLYKEYMRDDASNLVFCTWLVKNIIEIINDN
PGIQYSFNLDPQQLLYDSTFEAMKGLIPYCDRVMIEVTESIPSNRDIDQYFNYSVRDQIKRIHEMGFSVAVDDVSSGMNS
FNAVREYTQDIDRLKLSLIQLRNVEEGMITVTISLWKALAASTGIDLVIEGIDSLEVSKWLLENGLEKQQGYYFATPRKL
K

Sequences:

>Translated_241_residues
MSELEQKLEGICFYEQPIFLIDAAEKEEKKVIGSELLLRKTGGENRFPAMLYKEYMRDDASNLVFCTWLVKNIIEIINDN
PGIQYSFNLDPQQLLYDSTFEAMKGLIPYCDRVMIEVTESIPSNRDIDQYFNYSVRDQIKRIHEMGFSVAVDDVSSGMNS
FNAVREYTQDIDRLKLSLIQLRNVEEGMITVTISLWKALAASTGIDLVIEGIDSLEVSKWLLENGLEKQQGYYFATPRKL
K
>Mature_240_residues
SELEQKLEGICFYEQPIFLIDAAEKEEKKVIGSELLLRKTGGENRFPAMLYKEYMRDDASNLVFCTWLVKNIIEIINDNP
GIQYSFNLDPQQLLYDSTFEAMKGLIPYCDRVMIEVTESIPSNRDIDQYFNYSVRDQIKRIHEMGFSVAVDDVSSGMNSF
NAVREYTQDIDRLKLSLIQLRNVEEGMITVTISLWKALAASTGIDLVIEGIDSLEVSKWLLENGLEKQQGYYFATPRKLK

Specific function: Involved In Resistance To Phages N4 And Lambda. [C]

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27741; Mature: 27610

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSELEQKLEGICFYEQPIFLIDAAEKEEKKVIGSELLLRKTGGENRFPAMLYKEYMRDDA
CCHHHHHHCCEEEECCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC
SNLVFCTWLVKNIIEIINDNPGIQYSFNLDPQQLLYDSTFEAMKGLIPYCDRVMIEVTES
CCEEHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IPSNRDIDQYFNYSVRDQIKRIHEMGFSVAVDDVSSGMNSFNAVREYTQDIDRLKLSLIQ
CCCCCCHHHHHCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRNVEEGMITVTISLWKALAASTGIDLVIEGIDSLEVSKWLLENGLEKQQGYYFATPRKL
HHCCCCCCEEEHHHHHHHHHHCCCHHHEECCCCHHHHHHHHHHCCCHHHCCEEECCCCCC
K
C
>Mature Secondary Structure 
SELEQKLEGICFYEQPIFLIDAAEKEEKKVIGSELLLRKTGGENRFPAMLYKEYMRDDA
CHHHHHHCCEEEECCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC
SNLVFCTWLVKNIIEIINDNPGIQYSFNLDPQQLLYDSTFEAMKGLIPYCDRVMIEVTES
CCEEHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IPSNRDIDQYFNYSVRDQIKRIHEMGFSVAVDDVSSGMNSFNAVREYTQDIDRLKLSLIQ
CCCCCCHHHHHCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRNVEEGMITVTISLWKALAASTGIDLVIEGIDSLEVSKWLLENGLEKQQGYYFATPRKL
HHCCCCCCEEEHHHHHHHHHHCCCHHHEECCCCHHHHHHHHHHCCCHHHCCEEECCCCCC
K
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA