| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is gpmA [H]
Identifier: 116493438
GI number: 116493438
Start: 1687072
End: 1687761
Strand: Reverse
Name: gpmA [H]
Synonym: PEPE_1710
Alternate gene names: 116493438
Gene position: 1687761-1687072 (Counterclockwise)
Preceding gene: 116493439
Following gene: 116493437
Centisome position: 92.11
GC content: 41.01
Gene sequence:
>690_bases ATGGCAAAATTAGTTTTGATCCGTCATGGACAAAGTCAATGGAACTTATCAAACCAATTTACTGGTTGGGTTGATGTAGA TCTTAGTGACGAAGGTGTTAAACAAGCACAAAACGCTGGTAAGTTAATCAAGGAAGCTGGTATCGAATTCGATCAAGCTT ACACATCAGTATTAACTCGTGCCATCAAGACTTTGCACTATGCTTTGGAAGGTTCAGACCAACTATGGATTCCTGAAACA AAGACATGGCGCTTAAACGAACGTCATTATGGTGCTCTTCAAGGCCAAAACAAGGCTGAAGCAGCTGAAAAATGGGGCGA TGACCAAGTTCACACATGGCGTCGTTCATACGACGTTCTCCCTCCACTATTGGATGCAGATGATGAAGGTTCAGCAGCAA ACGATCGTCGTTACGCTAACTTAGACCCACGTATCATTCCTGGTGGTGAAAACCTTAAGGTTACTCTTGAACGTGTTATT CCTTTCTGGGAAGACGAAATTGCTCCTAAGTTAATCGATGGCAAGAACGTTATTATTGCTGCACATGGTAACTCACTACG TGCATTGAGCAAGTACATCGAAAATATCTCTGATGAAGATATTATTAATCTTGAAATGGCTACTGGTGAACCAGTTGTCT ATGACTTCAACGAAAAGCTTGAAGTACAAAGCAAAACAAAGCTTAACTAA
Upstream 100 bases:
>100_bases TTTTGTGGAAACTTCTTCATTTTCAGTTTGTACTAATTGCTCAAAAATTGTAAAATTATAATGTTAGAAATTTAATTCAA GAAAGAGGTATTTAAACGAT
Downstream 100 bases:
>100_bases TTTTAGTTAAGTTCAAGAAGTCTCAATTCGGTTTGAATTGGGACTTTTTTGTTTGCTAATATTTTTGTTGCATTTGCACC TATTTTAATATATAATAAGC
Product: phosphoglyceromutase
Products: NA
Alternate protein names: BPG-dependent PGAM 2; PGAM 2; Phosphoglyceromutase 2; dPGM 2 [H]
Number of amino acids: Translated: 229; Mature: 228
Protein sequence:
>229_residues MAKLVLIRHGQSQWNLSNQFTGWVDVDLSDEGVKQAQNAGKLIKEAGIEFDQAYTSVLTRAIKTLHYALEGSDQLWIPET KTWRLNERHYGALQGQNKAEAAEKWGDDQVHTWRRSYDVLPPLLDADDEGSAANDRRYANLDPRIIPGGENLKVTLERVI PFWEDEIAPKLIDGKNVIIAAHGNSLRALSKYIENISDEDIINLEMATGEPVVYDFNEKLEVQSKTKLN
Sequences:
>Translated_229_residues MAKLVLIRHGQSQWNLSNQFTGWVDVDLSDEGVKQAQNAGKLIKEAGIEFDQAYTSVLTRAIKTLHYALEGSDQLWIPET KTWRLNERHYGALQGQNKAEAAEKWGDDQVHTWRRSYDVLPPLLDADDEGSAANDRRYANLDPRIIPGGENLKVTLERVI PFWEDEIAPKLIDGKNVIIAAHGNSLRALSKYIENISDEDIINLEMATGEPVVYDFNEKLEVQSKTKLN >Mature_228_residues AKLVLIRHGQSQWNLSNQFTGWVDVDLSDEGVKQAQNAGKLIKEAGIEFDQAYTSVLTRAIKTLHYALEGSDQLWIPETK TWRLNERHYGALQGQNKAEAAEKWGDDQVHTWRRSYDVLPPLLDADDEGSAANDRRYANLDPRIIPGGENLKVTLERVIP FWEDEIAPKLIDGKNVIIAAHGNSLRALSKYIENISDEDIINLEMATGEPVVYDFNEKLEVQSKTKLN
Specific function: Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate [H]
COG id: COG0588
COG function: function code G; Phosphoglycerate mutase 1
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily [H]
Homologues:
Organism=Homo sapiens, GI50593010, Length=221, Percent_Identity=51.131221719457, Blast_Score=249, Evalue=2e-66, Organism=Homo sapiens, GI4505753, Length=221, Percent_Identity=51.5837104072398, Blast_Score=231, Evalue=3e-61, Organism=Homo sapiens, GI71274132, Length=221, Percent_Identity=49.7737556561086, Blast_Score=221, Evalue=3e-58, Organism=Homo sapiens, GI4502445, Length=222, Percent_Identity=46.8468468468468, Blast_Score=214, Evalue=4e-56, Organism=Homo sapiens, GI40353764, Length=222, Percent_Identity=46.8468468468468, Blast_Score=214, Evalue=4e-56, Organism=Homo sapiens, GI310129614, Length=161, Percent_Identity=52.7950310559006, Blast_Score=165, Evalue=3e-41, Organism=Escherichia coli, GI1786970, Length=221, Percent_Identity=57.4660633484163, Blast_Score=268, Evalue=3e-73, Organism=Saccharomyces cerevisiae, GI6322697, Length=221, Percent_Identity=52.4886877828054, Blast_Score=248, Evalue=6e-67, Organism=Saccharomyces cerevisiae, GI6320183, Length=268, Percent_Identity=32.089552238806, Blast_Score=125, Evalue=7e-30, Organism=Saccharomyces cerevisiae, GI6324516, Length=263, Percent_Identity=31.5589353612167, Blast_Score=121, Evalue=1e-28, Organism=Saccharomyces cerevisiae, GI6324857, Length=190, Percent_Identity=27.3684210526316, Blast_Score=68, Evalue=1e-12, Organism=Drosophila melanogaster, GI24646216, Length=222, Percent_Identity=50.9009009009009, Blast_Score=237, Evalue=5e-63, Organism=Drosophila melanogaster, GI85725270, Length=222, Percent_Identity=49.0990990990991, Blast_Score=215, Evalue=2e-56, Organism=Drosophila melanogaster, GI85725272, Length=222, Percent_Identity=49.0990990990991, Blast_Score=215, Evalue=2e-56, Organism=Drosophila melanogaster, GI24650981, Length=222, Percent_Identity=49.0990990990991, Blast_Score=215, Evalue=2e-56, Organism=Drosophila melanogaster, GI28571815, Length=220, Percent_Identity=35.4545454545455, Blast_Score=152, Evalue=1e-37, Organism=Drosophila melanogaster, GI28571817, Length=220, Percent_Identity=35.4545454545455, Blast_Score=152, Evalue=1e-37, Organism=Drosophila melanogaster, GI24648979, Length=220, Percent_Identity=35.4545454545455, Blast_Score=152, Evalue=2e-37,
Paralogues:
None
Copy number: 960 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013078 - InterPro: IPR005952 [H]
Pfam domain/function: PF00300 PGAM [H]
EC number: =5.4.2.1 [H]
Molecular weight: Translated: 25898; Mature: 25767
Theoretical pI: Translated: 4.72; Mature: 4.72
Prosite motif: PS00175 PG_MUTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKLVLIRHGQSQWNLSNQFTGWVDVDLSDEGVKQAQNAGKLIKEAGIEFDQAYTSVLTR CCEEEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH AIKTLHYALEGSDQLWIPETKTWRLNERHYGALQGQNKAEAAEKWGDDQVHTWRRSYDVL HHHHHHHHCCCCCEEECCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCC PPLLDADDEGSAANDRRYANLDPRIIPGGENLKVTLERVIPFWEDEIAPKLIDGKNVIIA CCCCCCCCCCCCCCCCEECCCCCEEECCCCCEEEEHHHHCCCCCHHCCCEEECCCEEEEE AHGNSLRALSKYIENISDEDIINLEMATGEPVVYDFNEKLEVQSKTKLN ECCCCHHHHHHHHHCCCCCCEEEEEECCCCCEEEECCCCEEECCCCCCC >Mature Secondary Structure AKLVLIRHGQSQWNLSNQFTGWVDVDLSDEGVKQAQNAGKLIKEAGIEFDQAYTSVLTR CEEEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH AIKTLHYALEGSDQLWIPETKTWRLNERHYGALQGQNKAEAAEKWGDDQVHTWRRSYDVL HHHHHHHHCCCCCEEECCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCC PPLLDADDEGSAANDRRYANLDPRIIPGGENLKVTLERVIPFWEDEIAPKLIDGKNVIIA CCCCCCCCCCCCCCCCEECCCCCEEECCCCCEEEEHHHHCCCCCHHCCCEEECCCEEEEE AHGNSLRALSKYIENISDEDIINLEMATGEPVVYDFNEKLEVQSKTKLN ECCCCHHHHHHHHHCCCCCCEEEEEECCCCCEEEECCCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA