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The map label for this gene is recO

Identifier: 116492865

GI number: 116492865

Start: 1103839

End: 1104600

Strand: Reverse

Name: recO

Synonym: PEPE_1103

Alternate gene names: 116492865

Gene position: 1104600-1103839 (Counterclockwise)

Preceding gene: 116492866

Following gene: 116492864

Centisome position: 60.28

GC content: 33.86

Gene sequence:

>762_bases
GTGAACACAGTCGCCAATGCTGATTTTAATGGCATTGTAATGTTTGAACGAAGCCATCGCGAAAATGATTTGTTAGTTAA
GTTTCTAACTAAAGAGCATGGTAAGCGAATGTTTTTCATTAGAAATGCCAAAAAAGTAGATTTTAAGTTAAGATCAGCGA
TTTTACCATTTAGTCATGGTCAGTATACGGGGCTAATTCGTAGTAACGGTTTGTCGTATATTAATGCTGCACTAGATGTT
CAGCAATTTGAAAATATTTTTCAAGATATCACGTTAAATGCTTACGCAACCTTTGTTCTTAATTTAGTTGATGCGGCTTT
TGATGATAATGTCAAAATCACATCATGGTTTGAGCGGATTAATCGCGCATTAATTTTAATTGATGCTGGAAATGATGCTG
AAATTATAACTGATTTAATCCAAATTCAATTATTAAATTCGTTTGGGATATCAATCACTTGGGATCACTGTGTGATTTGT
GGGCGAACCGATTTGCCTCTAGACTATTCAGAAGCGTTCGGTGGAATGCTATGTCAAAGTCATTGGGAACGAGATGAGCA
TCGTTGGCATTTAAAACCTAAGAGTGCGCGAATAATCGGAATTTTAAGTGCGGTTAGTATTTTTAAGTTAGGACAAATCT
CCATTTCAAAAGAGACCAAACAAGAAATTTGGAATTTAACAGCTGATATTTATAAAAATCAAGTTGGAATTAATTTGAAA
AGTCGAAGCTTTATTGATCAAATGAAAAAATGGGAAATTTAA

Upstream 100 bases:

>100_bases
GCCGTGTTTATCTTGAACTATGGGTTAAAGTTTCTGAAGGTTGGCGTGATAAACAAGGAATTTTGCAATCATTTGGTTAC
AAAAAGGATGAGTATTAAAA

Downstream 100 bases:

>100_bases
GTGATTTGACAATTAACTAAATTTCTTCTATCATCATTGTAGTTAATAGAGGACAGTGAAGAACGAAGTAGGCCTTATAA
GTTTTCAAAGCGAGATCAGA

Product: DNA replication and repair protein RecO

Products: NA

Alternate protein names: Recombination protein O

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MNTVANADFNGIVMFERSHRENDLLVKFLTKEHGKRMFFIRNAKKVDFKLRSAILPFSHGQYTGLIRSNGLSYINAALDV
QQFENIFQDITLNAYATFVLNLVDAAFDDNVKITSWFERINRALILIDAGNDAEIITDLIQIQLLNSFGISITWDHCVIC
GRTDLPLDYSEAFGGMLCQSHWERDEHRWHLKPKSARIIGILSAVSIFKLGQISISKETKQEIWNLTADIYKNQVGINLK
SRSFIDQMKKWEI

Sequences:

>Translated_253_residues
MNTVANADFNGIVMFERSHRENDLLVKFLTKEHGKRMFFIRNAKKVDFKLRSAILPFSHGQYTGLIRSNGLSYINAALDV
QQFENIFQDITLNAYATFVLNLVDAAFDDNVKITSWFERINRALILIDAGNDAEIITDLIQIQLLNSFGISITWDHCVIC
GRTDLPLDYSEAFGGMLCQSHWERDEHRWHLKPKSARIIGILSAVSIFKLGQISISKETKQEIWNLTADIYKNQVGINLK
SRSFIDQMKKWEI
>Mature_253_residues
MNTVANADFNGIVMFERSHRENDLLVKFLTKEHGKRMFFIRNAKKVDFKLRSAILPFSHGQYTGLIRSNGLSYINAALDV
QQFENIFQDITLNAYATFVLNLVDAAFDDNVKITSWFERINRALILIDAGNDAEIITDLIQIQLLNSFGISITWDHCVIC
GRTDLPLDYSEAFGGMLCQSHWERDEHRWHLKPKSARIIGILSAVSIFKLGQISISKETKQEIWNLTADIYKNQVGINLK
SRSFIDQMKKWEI

Specific function: Involved in DNA repair and recF pathway recombination

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECO_PEDPA (Q03F64)

Other databases:

- EMBL:   CP000422
- RefSeq:   YP_804600.1
- STRING:   Q03F64
- GeneID:   4417038
- GenomeReviews:   CP000422_GR
- KEGG:   ppe:PEPE_1103
- NMPDR:   fig|278197.10.peg.967
- eggNOG:   COG1381
- HOGENOM:   HBG634481
- OMA:   VMARGAK
- BioCyc:   PPEN278197:PEPE_1103-MONOMER
- HAMAP:   MF_00201
- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- TIGRFAMs:   TIGR00613

Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF57863 ArfGAP; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 29090; Mature: 29090

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTVANADFNGIVMFERSHRENDLLVKFLTKEHGKRMFFIRNAKKVDFKLRSAILPFSHG
CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHCCCCCCC
QYTGLIRSNGLSYINAALDVQQFENIFQDITLNAYATFVLNLVDAAFDDNVKITSWFERI
CEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
NRALILIDAGNDAEIITDLIQIQLLNSFGISITWDHCVICGRTDLPLDYSEAFGGMLCQS
CCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCEEEECCCCCCCCHHHHHHHHHHHH
HWERDEHRWHLKPKSARIIGILSAVSIFKLGQISISKETKQEIWNLTADIYKNQVGINLK
HCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCEEECHHHHHHHHHHHHHHHHHHCCCEEC
SRSFIDQMKKWEI
HHHHHHHHHHCCC
>Mature Secondary Structure
MNTVANADFNGIVMFERSHRENDLLVKFLTKEHGKRMFFIRNAKKVDFKLRSAILPFSHG
CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHCCCCCCC
QYTGLIRSNGLSYINAALDVQQFENIFQDITLNAYATFVLNLVDAAFDDNVKITSWFERI
CEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
NRALILIDAGNDAEIITDLIQIQLLNSFGISITWDHCVICGRTDLPLDYSEAFGGMLCQS
CCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCEEEECCCCCCCCHHHHHHHHHHHH
HWERDEHRWHLKPKSARIIGILSAVSIFKLGQISISKETKQEIWNLTADIYKNQVGINLK
HCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCEEECHHHHHHHHHHHHHHHHHHCCCEEC
SRSFIDQMKKWEI
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA