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The map label for this gene is scpA [H]

Identifier: 116492848

GI number: 116492848

Start: 1082209

End: 1082937

Strand: Reverse

Name: scpA [H]

Synonym: PEPE_1086

Alternate gene names: 116492848

Gene position: 1082937-1082209 (Counterclockwise)

Preceding gene: 116492849

Following gene: 116492847

Centisome position: 59.1

GC content: 34.29

Gene sequence:

>729_bases
ATGAAAGCTGAAAATTATACCCTACCAAACGTTAAGCTAGCTGAATTTGAGGGACCGCTAGATTTATTATTACATTTGAT
ACGAAAATCACAGATGAGTATTTATGATATAAAAATATCAGAAATTACTGCCCAATATTTACAATACTTACATTCACAAG
AATCGCTAGTGTTAAATATTGCTGGAGAGTATCTAGTGATGGCTGCAAAATTAACTGAAATCAAAGGAAAATTACTACTA
CCACATGATGAAGAAGTGATTGAGGAAGAAGATCCACGTAATGACTTAGTTGATCAACTTTTAGTTTATCAAATGTTTAA
GGAAGCTTCGGAAGGCCTAAAATCACTTGAAAAAGAACGACAGACCTCGTTTACACGCCCAGAAATGGAAATTCCTCCTA
ATGAAGCTAATCGCTTAGCTCCGGGCGTTAAAATAAGTGACTTACAATTCGCACTTCAGAAGGTTTTAGCGCGCCAAGCG
CTCCTAGAACCCACTTATAGAACCGTTAAAGCAGAAGAAGTCACTCTTGAAGAACGAATGTCAGAAATCAAAAAACGTAT
TTTTGATTTAAAGCAATGCTGTTTTGAAGATTTATTTATTGGACATTTTAGCCGAGAAACATTAGTAACAACCTTTATGG
CAATTTTAGAACTAGCTAAAAATCATCAAATCTTACTTGAACAGCCAGCAAGAAAACAATCAATTTTAATTAAGTTAGGT
GAAGTTTAA

Upstream 100 bases:

>100_bases
GAAATTTTAAGATCATTAACTTCTATCTATCCAGACCGGCGTTTAATGGGGTCGTTAAAAACTAGCGCAATGATTGAAAG
ATTCGAAATGGGGCAGGTAA

Downstream 100 bases:

>100_bases
TGAATAATGAGCAGAAAGTAGAAGCCCTACTTTTTGTAGCAGGGGCTGAAGGAATTTCAGTTGAAGAACTATCTAATTTC
ACGGGTTATGCTAAGCCTGC

Product: condensin subunit ScpA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MKAENYTLPNVKLAEFEGPLDLLLHLIRKSQMSIYDIKISEITAQYLQYLHSQESLVLNIAGEYLVMAAKLTEIKGKLLL
PHDEEVIEEEDPRNDLVDQLLVYQMFKEASEGLKSLEKERQTSFTRPEMEIPPNEANRLAPGVKISDLQFALQKVLARQA
LLEPTYRTVKAEEVTLEERMSEIKKRIFDLKQCCFEDLFIGHFSRETLVTTFMAILELAKNHQILLEQPARKQSILIKLG
EV

Sequences:

>Translated_242_residues
MKAENYTLPNVKLAEFEGPLDLLLHLIRKSQMSIYDIKISEITAQYLQYLHSQESLVLNIAGEYLVMAAKLTEIKGKLLL
PHDEEVIEEEDPRNDLVDQLLVYQMFKEASEGLKSLEKERQTSFTRPEMEIPPNEANRLAPGVKISDLQFALQKVLARQA
LLEPTYRTVKAEEVTLEERMSEIKKRIFDLKQCCFEDLFIGHFSRETLVTTFMAILELAKNHQILLEQPARKQSILIKLG
EV
>Mature_242_residues
MKAENYTLPNVKLAEFEGPLDLLLHLIRKSQMSIYDIKISEITAQYLQYLHSQESLVLNIAGEYLVMAAKLTEIKGKLLL
PHDEEVIEEEDPRNDLVDQLLVYQMFKEASEGLKSLEKERQTSFTRPEMEIPPNEANRLAPGVKISDLQFALQKVLARQA
LLEPTYRTVKAEEVTLEERMSEIKKRIFDLKQCCFEDLFIGHFSRETLVTTFMAILELAKNHQILLEQPARKQSILIKLG
EV

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpB that pull DNA away from mid-cell into both cell halves [H]

COG id: COG1354

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003768 [H]

Pfam domain/function: PF02616 ScpA_ScpB [H]

EC number: NA

Molecular weight: Translated: 27916; Mature: 27916

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAENYTLPNVKLAEFEGPLDLLLHLIRKSQMSIYDIKISEITAQYLQYLHSQESLVLNI
CCCCCCCCCCCEEHHCCCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHCCCCEEEEE
AGEYLVMAAKLTEIKGKLLLPHDEEVIEEEDPRNDLVDQLLVYQMFKEASEGLKSLEKER
HHHHHHHHHHHHHHCCCEECCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTSFTRPEMEIPPNEANRLAPGVKISDLQFALQKVLARQALLEPTYRTVKAEEVTLEERM
HHCCCCCCCCCCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
SEIKKRIFDLKQCCFEDLFIGHFSRETLVTTFMAILELAKNHQILLEQPARKQSILIKLG
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHEEC
EV
CC
>Mature Secondary Structure
MKAENYTLPNVKLAEFEGPLDLLLHLIRKSQMSIYDIKISEITAQYLQYLHSQESLVLNI
CCCCCCCCCCCEEHHCCCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHCCCCEEEEE
AGEYLVMAAKLTEIKGKLLLPHDEEVIEEEDPRNDLVDQLLVYQMFKEASEGLKSLEKER
HHHHHHHHHHHHHHCCCEECCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTSFTRPEMEIPPNEANRLAPGVKISDLQFALQKVLARQALLEPTYRTVKAEEVTLEERM
HHCCCCCCCCCCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
SEIKKRIFDLKQCCFEDLFIGHFSRETLVTTFMAILELAKNHQILLEQPARKQSILIKLG
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHEEC
EV
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12566566 [H]