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The map label for this gene is scpB

Identifier: 116492847

GI number: 116492847

Start: 1081619

End: 1082209

Strand: Reverse

Name: scpB

Synonym: PEPE_1085

Alternate gene names: 116492847

Gene position: 1082209-1081619 (Counterclockwise)

Preceding gene: 116492848

Following gene: 116492846

Centisome position: 59.06

GC content: 34.35

Gene sequence:

>591_bases
ATGAATAATGAGCAGAAAGTAGAAGCCCTACTTTTTGTAGCAGGGGCTGAAGGAATTTCAGTTGAAGAACTATCTAATTT
CACGGGTTATGCTAAGCCTGCTATACTAACGATGCTAGATAATCTTGAAAAAAATTACGAAGTTAATTCTAAAACTGCTT
TGAAGCTAATCCAAACTGGTGGTACTTACAAACTAGTTACTAAACCTGAGTTAGCATCGATTTTAGAAAAGTATTTTGAT
CGAAATAGTCGCTCAGGACTATCGCCTGCAGCATTAGAAATATTGTCAATTGTGGCTTATCGTCAACCCATAACACGGAT
TGAAATTGACCAAATTCGCGGTGTTCAAAGTGGCACGACTTTACAGAACTTAGTACTTAGAAATCTAGTGAAAGTAGTTG
GTAGACTTGAAGAGCCTGGAAGACCCAAAACGTATGGTACAACAGATGAGTTTTTAGATTATTTTGGTTTAGAGGATATT
AAAGATTTACCTAAACTTGAAAAAGTTGGAGAAGATTCAGAATTAGACGATAGCGATTTATTTTTACAAGAGTTTGAATC
AAAAATGAATTTAAATAATAAGGAGAAATAA

Upstream 100 bases:

>100_bases
CAACCTTTATGGCAATTTTAGAACTAGCTAAAAATCATCAAATCTTACTTGAACAGCCAGCAAGAAAACAATCAATTTTA
ATTAAGTTAGGTGAAGTTTA

Downstream 100 bases:

>100_bases
ATGGAAGAAGAAAGATTACAAAAAGTAATGGCTGAAGCAGGAGTTGCTTCAAGACGAAAGTCAGAAAAATTAATTACTGA
AGGCCATGTACGTGTTAATG

Product: condensin subunit ScpB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MNNEQKVEALLFVAGAEGISVEELSNFTGYAKPAILTMLDNLEKNYEVNSKTALKLIQTGGTYKLVTKPELASILEKYFD
RNSRSGLSPAALEILSIVAYRQPITRIEIDQIRGVQSGTTLQNLVLRNLVKVVGRLEEPGRPKTYGTTDEFLDYFGLEDI
KDLPKLEKVGEDSELDDSDLFLQEFESKMNLNNKEK

Sequences:

>Translated_196_residues
MNNEQKVEALLFVAGAEGISVEELSNFTGYAKPAILTMLDNLEKNYEVNSKTALKLIQTGGTYKLVTKPELASILEKYFD
RNSRSGLSPAALEILSIVAYRQPITRIEIDQIRGVQSGTTLQNLVLRNLVKVVGRLEEPGRPKTYGTTDEFLDYFGLEDI
KDLPKLEKVGEDSELDDSDLFLQEFESKMNLNNKEK
>Mature_196_residues
MNNEQKVEALLFVAGAEGISVEELSNFTGYAKPAILTMLDNLEKNYEVNSKTALKLIQTGGTYKLVTKPELASILEKYFD
RNSRSGLSPAALEILSIVAYRQPITRIEIDQIRGVQSGTTLQNLVLRNLVKVVGRLEEPGRPKTYGTTDEFLDYFGLEDI
KDLPKLEKVGEDSELDDSDLFLQEFESKMNLNNKEK

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SCPB_PEDPA (Q03F82)

Other databases:

- EMBL:   CP000422
- RefSeq:   YP_804582.1
- ProteinModelPortal:   Q03F82
- SMR:   Q03F82
- STRING:   Q03F82
- GeneID:   4417020
- GenomeReviews:   CP000422_GR
- KEGG:   ppe:PEPE_1085
- NMPDR:   fig|278197.10.peg.953
- eggNOG:   COG1386
- HOGENOM:   HBG752450
- OMA:   TYKLTTS
- BioCyc:   PPEN278197:PEPE_1085-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01804
- InterPro:   IPR005234
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PIRSF:   PIRSF019345
- TIGRFAMs:   TIGR00281

Pfam domain/function: PF04079 DUF387

EC number: NA

Molecular weight: Translated: 22008; Mature: 22008

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNEQKVEALLFVAGAEGISVEELSNFTGYAKPAILTMLDNLEKNYEVNSKTALKLIQTG
CCCHHHHHHHHHEECCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
GTYKLVTKPELASILEKYFDRNSRSGLSPAALEILSIVAYRQPITRIEIDQIRGVQSGTT
CCEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHEEHHHHCCCCCCHH
LQNLVLRNLVKVVGRLEEPGRPKTYGTTDEFLDYFGLEDIKDLPKLEKVGEDSELDDSDL
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHCCCCCCCCHHHH
FLQEFESKMNLNNKEK
HHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNNEQKVEALLFVAGAEGISVEELSNFTGYAKPAILTMLDNLEKNYEVNSKTALKLIQTG
CCCHHHHHHHHHEECCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
GTYKLVTKPELASILEKYFDRNSRSGLSPAALEILSIVAYRQPITRIEIDQIRGVQSGTT
CCEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHEEHHHHCCCCCCHH
LQNLVLRNLVKVVGRLEEPGRPKTYGTTDEFLDYFGLEDIKDLPKLEKVGEDSELDDSDL
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHCCCCCCCCHHHH
FLQEFESKMNLNNKEK
HHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA