| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is 116492845
Identifier: 116492845
GI number: 116492845
Start: 1079868
End: 1080896
Strand: Reverse
Name: 116492845
Synonym: PEPE_1083
Alternate gene names: NA
Gene position: 1080896-1079868 (Counterclockwise)
Preceding gene: 116492846
Following gene: 116492844
Centisome position: 58.99
GC content: 34.69
Gene sequence:
>1029_bases ATGATTCCAGAAGATGTTTTAGCTTTTTTTGATCTTAAGCAGGGGCGCCGTCCGAAGGCAATTTTGAATGTATTGGTTGG TAAAATGACGGTTTCGGCCTTATTTTGGGGCTTAGAATACGATATTTTGGAGTACCTAAATTTCTGGAAAACAATTGATA CAACCTCTTTTCTAGAAAATGTTGACCGAGCTGTTGAAGGTGGTTTTTTAGCCAAAAAGGATGAGTTGATTTATTTGACG GAGGCAGGACAACAAAAGCAATTCAGTTGTACGACTCCTACGCCTTTTATTAAAAAAGTTCGGCTCGATGAGGCAATTGA TTTGTTGCTATTAGCTAACCAGGTAATTTCCGAATTTAGTTTTAAAAACAACCGTTATATCCCAGTCAGTGATAATCTTC GAATTAATGTGATCTTAAAGAATTGGTTTAAGCAACTTAAGTCAAGAAACCATCATACGACAGACATTGTTCAAAAATAT ACGCAGGGTTTAGATGAACTTTTAAGTCAATTACAACAGCACGATGCAGACATCTTGCTTAGTTATCTCCCCAATCATGT TGATCCGGGGTGGACTATTGATCAACTAGCTCAGGCATTTGGAATCAGCAAATTTCAAATGGAACTTAAAATTAGGTTGA TTTTTAGCAAGATTATTAGTGATGCTGTTTTAACAAAAATAGCACCGTTTGTTGATTTATTAAATTCAACCATTAAAGAA AATGTTATGCCAGATAGCACTTATCAAACGTGGCAATTAATTCGACAAGGTAAAACGGTGGACGAAGTTGCACGTTTGAA ACATGTTAAAACTAATACCGTGAAGGAACACATCTTGATGGCAGCAATTTTGGATTCTAATTTTCCATTTGATAAGTTTG TTAGATTTAATTTTGAGATTGGGAAGCATCCTACAGAAGTTGACTTTAGAAGTATCCAAAGCCAAATTGCAGATATTACA TTTTTTGATTTTAGGCTAATCCAAATCAGAAAAATTAAGGAACAACAGAATAATAATGGTAACAGATAA
Upstream 100 bases:
>100_bases GTGATAGTTACTCATTTTTAAATATTGATGGAGTGCAATCTGGAAAATGGCGTGCTTTGAAGGTTAATGAAATTAGTCGT CTAAAACGTCAAATTGAAAA
Downstream 100 bases:
>100_bases AAAAATTTATCAAGTCTTACATGAGAAATTTAATTTTACTGAGTTTAAAACGGGTCAGTTAGAAATTTTACATAAACTTT TTGACCATCACCATACATTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 342; Mature: 342
Protein sequence:
>342_residues MIPEDVLAFFDLKQGRRPKAILNVLVGKMTVSALFWGLEYDILEYLNFWKTIDTTSFLENVDRAVEGGFLAKKDELIYLT EAGQQKQFSCTTPTPFIKKVRLDEAIDLLLLANQVISEFSFKNNRYIPVSDNLRINVILKNWFKQLKSRNHHTTDIVQKY TQGLDELLSQLQQHDADILLSYLPNHVDPGWTIDQLAQAFGISKFQMELKIRLIFSKIISDAVLTKIAPFVDLLNSTIKE NVMPDSTYQTWQLIRQGKTVDEVARLKHVKTNTVKEHILMAAILDSNFPFDKFVRFNFEIGKHPTEVDFRSIQSQIADIT FFDFRLIQIRKIKEQQNNNGNR
Sequences:
>Translated_342_residues MIPEDVLAFFDLKQGRRPKAILNVLVGKMTVSALFWGLEYDILEYLNFWKTIDTTSFLENVDRAVEGGFLAKKDELIYLT EAGQQKQFSCTTPTPFIKKVRLDEAIDLLLLANQVISEFSFKNNRYIPVSDNLRINVILKNWFKQLKSRNHHTTDIVQKY TQGLDELLSQLQQHDADILLSYLPNHVDPGWTIDQLAQAFGISKFQMELKIRLIFSKIISDAVLTKIAPFVDLLNSTIKE NVMPDSTYQTWQLIRQGKTVDEVARLKHVKTNTVKEHILMAAILDSNFPFDKFVRFNFEIGKHPTEVDFRSIQSQIADIT FFDFRLIQIRKIKEQQNNNGNR >Mature_342_residues MIPEDVLAFFDLKQGRRPKAILNVLVGKMTVSALFWGLEYDILEYLNFWKTIDTTSFLENVDRAVEGGFLAKKDELIYLT EAGQQKQFSCTTPTPFIKKVRLDEAIDLLLLANQVISEFSFKNNRYIPVSDNLRINVILKNWFKQLKSRNHHTTDIVQKY TQGLDELLSQLQQHDADILLSYLPNHVDPGWTIDQLAQAFGISKFQMELKIRLIFSKIISDAVLTKIAPFVDLLNSTIKE NVMPDSTYQTWQLIRQGKTVDEVARLKHVKTNTVKEHILMAAILDSNFPFDKFVRFNFEIGKHPTEVDFRSIQSQIADIT FFDFRLIQIRKIKEQQNNNGNR
Specific function: Unknown
COG id: COG4955
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39659; Mature: 39659
Theoretical pI: Translated: 8.41; Mature: 8.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIPEDVLAFFDLKQGRRPKAILNVLVGKMTVSALFWGLEYDILEYLNFWKTIDTTSFLEN CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHH VDRAVEGGFLAKKDELIYLTEAGQQKQFSCTTPTPFIKKVRLDEAIDLLLLANQVISEFS HHHHHHCCCEECCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH FKNNRYIPVSDNLRINVILKNWFKQLKSRNHHTTDIVQKYTQGLDELLSQLQQHDADILL CCCCCEEECCCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH SYLPNHVDPGWTIDQLAQAFGISKFQMELKIRLIFSKIISDAVLTKIAPFVDLLNSTIKE HHCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NVMPDSTYQTWQLIRQGKTVDEVARLKHVKTNTVKEHILMAAILDSNFPFDKFVRFNFEI CCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEEEEEEE GKHPTEVDFRSIQSQIADITFFDFRLIQIRKIKEQQNNNGNR CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MIPEDVLAFFDLKQGRRPKAILNVLVGKMTVSALFWGLEYDILEYLNFWKTIDTTSFLEN CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHH VDRAVEGGFLAKKDELIYLTEAGQQKQFSCTTPTPFIKKVRLDEAIDLLLLANQVISEFS HHHHHHCCCEECCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH FKNNRYIPVSDNLRINVILKNWFKQLKSRNHHTTDIVQKYTQGLDELLSQLQQHDADILL CCCCCEEECCCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH SYLPNHVDPGWTIDQLAQAFGISKFQMELKIRLIFSKIISDAVLTKIAPFVDLLNSTIKE HHCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NVMPDSTYQTWQLIRQGKTVDEVARLKHVKTNTVKEHILMAAILDSNFPFDKFVRFNFEI CCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEEEEEEE GKHPTEVDFRSIQSQIADITFFDFRLIQIRKIKEQQNNNGNR CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA